Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LOY38_RS27610 Genome accession   NZ_CP087196
Coordinates   6063403..6064467 (-) Length   354 a.a.
NCBI ID   WP_258697935.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-015     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6058403..6069467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY38_RS27585 (LOY38_27525) aroK 6059090..6059608 (-) 519 WP_258697930.1 shikimate kinase AroK -
  LOY38_RS27590 (LOY38_27530) pilQ 6059613..6061679 (-) 2067 WP_258697931.1 type IV pilus secretin PilQ Machinery gene
  LOY38_RS27595 (LOY38_27535) - 6061693..6062220 (-) 528 WP_258697932.1 pilus assembly protein PilP -
  LOY38_RS27600 (LOY38_27540) pilO 6062217..6062840 (-) 624 WP_258697933.1 type 4a pilus biogenesis protein PilO -
  LOY38_RS27605 (LOY38_27545) - 6062837..6063403 (-) 567 WP_258697934.1 PilN domain-containing protein -
  LOY38_RS27610 (LOY38_27550) comM 6063403..6064467 (-) 1065 WP_258697935.1 pilus assembly protein PilM Machinery gene
  LOY38_RS27615 (LOY38_27555) - 6064686..6067124 (+) 2439 WP_408980647.1 penicillin-binding protein 1A -
  LOY38_RS27620 (LOY38_27560) - 6067383..6068651 (-) 1269 WP_258697937.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38149.61 Da        Isoelectric Point: 4.7417

>NTDB_id=627890 LOY38_RS27610 WP_258697935.1 6063403..6064467(-) (comM) [Pseudomonas sp. B21-015]
MLGLFNKKANTLLGIDISSTSVKLLELSRQGDRYRVEAYAVEPLPASAVVEKNIAELEGVGQALARVLVKARTSLRNVAV
AVAGSAVITKIIEMDAGLSDDEMENQLKIEADQYIPYPLDEVAIDFEVQGVSARNPERVNVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFSLLATQLAASQERLTVAVVDIGATMTTLNVLHNGRIIYTREQLFGGRQLTEEIQRRYGLTV
EQAGLAKKQGGLPDDYVSEVLQPFREALVQQVSRSLQFFFASGQYNSVDHILLAGGTASVSGLDRLIEQRLGTPTQVANP
FSDMTLGSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=627890 LOY38_RS27610 WP_258697935.1 6063403..6064467(-) (comM) [Pseudomonas sp. B21-015]
GTGCTAGGACTCTTCAATAAAAAGGCCAATACGCTTCTGGGGATCGACATCAGCTCCACGTCGGTGAAGCTTCTGGAGCT
AAGTCGCCAGGGCGACCGCTACCGGGTCGAGGCCTATGCGGTCGAGCCGCTGCCCGCCAGTGCCGTGGTCGAGAAAAACA
TCGCCGAGCTCGAAGGTGTGGGGCAGGCCCTTGCGCGCGTGCTGGTCAAGGCCAGAACCAGCCTCAGGAACGTCGCCGTG
GCGGTCGCCGGCTCGGCGGTGATCACCAAGATCATCGAGATGGACGCCGGTCTTTCCGACGACGAAATGGAAAACCAGCT
GAAGATCGAGGCCGATCAGTACATCCCTTATCCACTGGACGAAGTGGCGATCGATTTCGAAGTGCAGGGCGTGTCGGCGC
GCAACCCCGAGCGGGTCAATGTGCTACTGGCCGCCTGTCGCAAGGAAAACGTCGAGGTTCGTGAAGCGGCTTTGGCCCTG
GCCGGGTTGACCGCGCGCGTGGTCGATGTCGAAGCCTATGCCCTGGAGCGATCGTTTAGCCTGTTGGCAACCCAGCTGGC
CGCCTCTCAGGAGCGTCTGACCGTGGCGGTGGTCGATATCGGCGCGACCATGACCACCCTGAACGTGCTGCACAATGGGC
GAATCATCTACACCCGTGAACAATTGTTCGGCGGCCGTCAACTGACGGAAGAAATCCAGCGCCGTTATGGCCTGACGGTC
GAGCAGGCGGGGCTGGCGAAGAAGCAGGGTGGTTTGCCGGACGATTACGTCAGCGAGGTCTTGCAGCCGTTTCGTGAGGC
GTTGGTGCAACAGGTGTCGCGTTCGTTGCAGTTTTTCTTTGCCTCCGGCCAATACAACTCGGTCGATCACATCCTTCTGG
CCGGCGGCACCGCCTCGGTCTCCGGGCTGGATCGGTTGATCGAGCAGCGCCTGGGTACGCCGACCCAGGTCGCCAATCCA
TTCTCCGACATGACCCTGGGCAGCAAGGTCAACGCCGGTGCCCTGGCCAGTGATGCCCCGGCGCTGATGATCGCCTGTGG
GCTGGCCCTCAGGAGTTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

55.932

100

0.559
  pilM Acinetobacter baumannii D1279779

55.65

100

0.557
  comM Acinetobacter baylyi ADP1

54.802

100

0.548
  pilM Legionella pneumophila strain ERS1305867

48.87

100

0.489