Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LOY31_RS02090 Genome accession   NZ_CP087192
Coordinates   467092..469170 (+) Length   692 a.a.
NCBI ID   WP_258712763.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-021     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 462092..474170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY31_RS02070 (LOY31_02070) comM 464306..465370 (+) 1065 WP_007952389.1 pilus assembly protein PilM Machinery gene
  LOY31_RS02075 (LOY31_02075) - 465370..465936 (+) 567 WP_007952387.1 PilN domain-containing protein -
  LOY31_RS02080 (LOY31_02080) pilO 465933..466556 (+) 624 WP_085608413.1 type 4a pilus biogenesis protein PilO -
  LOY31_RS02085 (LOY31_02085) - 466553..467077 (+) 525 WP_258712762.1 pilus assembly protein PilP -
  LOY31_RS02090 (LOY31_02090) pilQ 467092..469170 (+) 2079 WP_258712763.1 type IV pilus secretin PilQ Machinery gene
  LOY31_RS02095 (LOY31_02095) aroK 469175..469693 (+) 519 WP_045121685.1 shikimate kinase AroK -
  LOY31_RS02100 (LOY31_02100) aroB 469844..470944 (+) 1101 WP_011332082.1 3-dehydroquinate synthase -
  LOY31_RS02105 (LOY31_02105) - 470955..472550 (+) 1596 WP_007952374.1 AAA family ATPase -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 74988.15 Da        Isoelectric Point: 5.5724

>NTDB_id=627750 LOY31_RS02090 WP_258712763.1 467092..469170(+) (pilQ) [Pseudomonas sp. B21-021]
MNRIFSTLGFSLWMALLSPMVQAANLKALDVAALPGDRVELKLSFDGPPPQPKGYTTDSPARIALDLPGVASQLASKTRD
LGSGNARTATVVEANNRTRLIISLTQLAPYDTRVEGNAVFVVVGQGSKAAAPRPAARAPRAAPAAAPVRTFAPTARAIRG
VDFQRGTAGEGNVVIDLSDPAIAPDIQEHDGKIILNFARTQLPEPLRVRLDVKDFATPVQFVNAGVSGDRATITVEPNGT
FDYSTYQTDNKLTVSIRPLTVDDLQKRNADRNSYNGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQNV
PWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESQKQIAELAPLRRELLQVNYAKAADIAKLFQSVTSAEAK
VDERGSITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSIQNKGNWNTSGVSN
GSSTTIGTPGSTSTNSPFVDMGTVNNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPY
QEASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGVFSN
TQSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=627750 LOY31_RS02090 WP_258712763.1 467092..469170(+) (pilQ) [Pseudomonas sp. B21-021]
ATGAACAGGATTTTTTCCACCCTCGGTTTTTCGCTATGGATGGCGCTGCTTTCACCGATGGTACAGGCAGCCAATCTGAA
GGCGCTGGACGTCGCGGCACTGCCGGGCGACCGGGTCGAGCTGAAGCTGTCATTCGACGGCCCACCCCCGCAGCCCAAGG
GCTATACCACCGATTCGCCGGCACGGATCGCTCTCGATCTGCCGGGTGTCGCCAGTCAGCTGGCGAGCAAGACCCGTGAC
CTGGGCAGTGGCAATGCCCGCACGGCCACGGTGGTCGAGGCCAATAACCGGACGCGGCTCATCATCAGCCTGACGCAACT
GGCGCCTTACGACACCCGGGTCGAAGGCAATGCGGTATTCGTGGTGGTCGGGCAAGGCAGCAAAGCCGCTGCCCCGCGTC
CGGCGGCTCGTGCACCGCGCGCAGCACCTGCGGCAGCGCCGGTCCGGACCTTTGCGCCAACCGCCAGAGCCATTCGCGGT
GTGGATTTCCAGCGTGGCACGGCGGGCGAGGGCAACGTGGTCATCGACCTGTCCGATCCAGCCATCGCACCGGATATTCA
GGAACACGACGGCAAGATCATCCTCAATTTCGCCCGTACCCAATTGCCCGAACCGCTGCGGGTGCGCCTCGACGTCAAGG
ATTTCGCCACCCCGGTGCAGTTCGTCAACGCTGGTGTCAGTGGTGATCGGGCGACGATCACCGTCGAACCCAACGGTACG
TTCGACTATTCCACTTACCAGACCGACAACAAGCTGACCGTCAGCATCCGGCCGTTGACCGTCGATGACCTGCAAAAGCG
CAACGCCGACCGCAACAGCTATAACGGCGAAAAGCTCTCTCTCAACTTCCAGGACATCGATGTGCGTTCGGTGCTGCAAC
TGATCGCCGACTTCACCAACCTCAATCTGGTGGCCAGCGATACGGTGCAGGGCGGAATCACCTTGCGCCTGCAGAACGTA
CCGTGGGATCAGGCGCTGGATCTGGTGCTCAAGACCAAAGGCCTGGACAAGCGCAAGGTCGGCAACGTGTTGCTGGTGGC
GCCGGCCGATGAAATCGCCGCCCGCGAACGGCAGGAACTGGAATCGCAGAAACAGATCGCCGAACTGGCGCCGTTGCGCC
GCGAGCTGCTGCAAGTGAACTACGCCAAGGCTGCGGACATCGCCAAGCTGTTTCAGTCGGTCACCAGCGCCGAGGCCAAG
GTCGACGAGCGGGGTTCGATCACCGTCGATGAGCGGACCAACAACATCATTGCCTACCAGACCCAGGATCGCCTCGACGA
GCTGCGGCGGATCGTGGCGCAGCTGGATATCCCGGTGCGTCAGGTGATGATCGAGGCGCGGATCGTCGAGGCCAACGTCG
ATTACGACAAGAGCCTGGGCGTGCGCTGGGGCGGTTCGATCCAGAACAAGGGCAACTGGAACACTTCCGGGGTCAGCAAC
GGTTCGTCGACCACCATTGGTACGCCGGGCAGCACCAGCACCAACTCGCCGTTCGTCGACATGGGCACGGTCAACAATAC
GTCCGGGATCGGCATCGCGTTCATCACCGACAACGTATTGCTCGACCTCGAGCTGACCGCGATGGAGAAGACCGGCAACG
GCGAAATCGTCTCGCAGCCCAAGGTGGTCACCTCCGACAAGGAGACCGCGAAGATCCTCAAGGGCACCGAGATTCCGTAC
CAGGAAGCCAGCTCCAGCGGCGCTACGTCGGTGTCCTTCAAGGAGGCGTCGCTGTCGCTGGAAGTGACGCCGCAGATCAC
CCCGGACAACCGCATCATCATGGAGGTCAAGGTCACCAAGGACGAACCGGACTACCTGAACAAAGTGCAGGATGTACCGC
CGATCAAGAAAAACGAGGTCAACGCCAAGGTGCTGGTGAACGACGGCGAGACCATCGTGATTGGGGGCGTTTTCTCAAAT
ACTCAAAGCAAGGTTGTAGATAAGGTGCCATTTCTTGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGATGTGGT
TTCGGAGAAAAAATCCGAGCTGCTGGTATTTCTCACTCCGCGTATCATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(302-348)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-441)

Bacterial type II and III secretion system protein (Secretin)

(527-683)

AMIN domain (AMIN)

(37-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

71.469

100

0.738
  comQ Acinetobacter baylyi ADP1

40.303

100

0.423
  pilQ Acinetobacter baumannii strain A118

37.383

100

0.405
  pilQ Acinetobacter baumannii D1279779

37.383

100

0.405
  pilQ Legionella pneumophila strain Lp02

37.63

97.543

0.367
  pilQ Legionella pneumophila strain ERS1305867

37.593

97.254

0.366