Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LOY41_RS01925 Genome accession   NZ_CP087187
Coordinates   436476..438554 (+) Length   692 a.a.
NCBI ID   WP_122705134.1    Uniprot ID   -
Organism   Pseudomonas atacamensis strain B21-026     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 431476..443554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY41_RS01905 (LOY41_01900) pilM 433691..434755 (+) 1065 WP_024011266.1 pilus assembly protein PilM Machinery gene
  LOY41_RS01910 (LOY41_01905) - 434755..435321 (+) 567 WP_016772051.1 PilN domain-containing protein -
  LOY41_RS01915 (LOY41_01910) pilO 435318..435941 (+) 624 WP_122705136.1 type 4a pilus biogenesis protein PilO -
  LOY41_RS01920 (LOY41_01915) - 435938..436462 (+) 525 WP_073471601.1 pilus assembly protein PilP -
  LOY41_RS01925 (LOY41_01920) pilQ 436476..438554 (+) 2079 WP_122705134.1 type IV pilus secretin PilQ Machinery gene
  LOY41_RS01930 (LOY41_01925) aroK 438559..439077 (+) 519 WP_073471603.1 shikimate kinase AroK -
  LOY41_RS01935 (LOY41_01930) aroB 439230..440330 (+) 1101 WP_073471604.1 3-dehydroquinate synthase -
  LOY41_RS01940 (LOY41_01935) - 440341..441927 (+) 1587 WP_039756683.1 AAA family ATPase -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 74871.10 Da        Isoelectric Point: 5.4106

>NTDB_id=627624 LOY41_RS01925 WP_122705134.1 436476..438554(+) (pilQ) [Pseudomonas atacamensis strain B21-026]
MNRIFSTLGFSLWIALVSPMVMAASLKALDVAALPGDRVELKLSFDGPPPQPKGYTTESPARIALDLPGVTSQLASRNLD
LGSGNARTATVAEAKDRTRLIVSLTQLAPYSTRVEGNNLFVVVGQGASTTAPRPAAVAPRAATAAAATARPAAQRSRAIR
GVDFQRGSEGEGNVVIDLSDPTIAPDIQEHDGKIILSFARTQLPEKLRVRLDVKDFATPVQFVNAALTGDRTVISVEPSG
TFDYSTFQTDNKLTVSVRPMSIDDLQKRNADRQAYVGDKLSLNFQDIDVRSVLQLIADFTSLNLVASDTVQGGITLRLQN
VPWDQALDLVLKTKGLDKRKIGNVLLVAPADEIAARERQELESQKQIAELAPLRRELLQVNYAKAADIAKLFQSVTSAEA
KVDERGSITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSVQNKGNWNASGVN
GSSSTIGTPGSTGTNSPFVDMGTVNNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPY
QEASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGVFSN
TQSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=627624 LOY41_RS01925 WP_122705134.1 436476..438554(+) (pilQ) [Pseudomonas atacamensis strain B21-026]
ATGAACAGGATTTTCTCCACCCTCGGTTTTTCGCTATGGATAGCGCTGGTGTCACCGATGGTAATGGCGGCCAGTCTGAA
AGCGCTGGATGTTGCCGCGCTGCCGGGTGACCGCGTCGAACTGAAGCTGTCTTTCGACGGCCCGCCACCACAGCCCAAGG
GCTACACAACCGAGTCGCCTGCGCGCATTGCACTGGATCTGCCGGGCGTGACCAGCCAGTTGGCCAGCAGGAATCTTGAT
CTGGGCAGCGGCAACGCGCGCACGGCCACGGTGGCCGAAGCCAAGGATCGCACGCGGCTGATAGTCAGCCTGACGCAGTT
GGCGCCTTACAGCACGCGGGTCGAGGGCAATAATCTGTTTGTGGTGGTCGGTCAGGGCGCCTCCACGACTGCGCCGCGCC
CGGCTGCCGTTGCACCGCGTGCCGCCACGGCCGCTGCGGCAACTGCCAGACCAGCCGCGCAACGCAGCAGGGCGATTCGC
GGCGTCGATTTCCAGCGCGGCAGCGAGGGCGAGGGCAACGTAGTCATCGATCTCTCCGATCCGACCATCGCCCCGGATAT
CCAGGAGCACGACGGCAAGATCATCCTCAGCTTCGCCCGTACGCAATTGCCGGAAAAGCTGCGCGTGCGCCTCGACGTCA
AGGACTTCGCCACGCCGGTGCAGTTCGTCAACGCAGCGCTCACCGGCGATCGCACCGTGATCAGTGTCGAGCCCAGCGGC
ACCTTCGACTACTCCACGTTTCAGACCGACAACAAGCTCACCGTGAGCGTGCGGCCGATGAGCATCGACGACCTGCAAAA
GCGCAACGCCGACCGTCAGGCCTATGTCGGCGACAAGCTCTCGCTGAATTTTCAGGACATCGACGTGCGCTCGGTGCTGC
AGCTGATCGCGGACTTCACCAGCCTCAACCTCGTAGCAAGCGATACGGTGCAGGGCGGGATCACCTTGCGCCTGCAGAAC
GTGCCGTGGGATCAGGCGCTGGATCTGGTGCTGAAAACCAAGGGGCTGGACAAGCGCAAGATCGGCAACGTGCTGCTGGT
CGCGCCGGCCGATGAAATTGCCGCTCGCGAGCGTCAGGAACTGGAATCGCAGAAGCAGATCGCCGAGCTGGCGCCCCTGC
GTCGTGAGCTGCTGCAAGTCAATTACGCCAAGGCGGCGGACATCGCCAAGCTGTTCCAGTCGGTGACCAGTGCCGAGGCC
AAGGTCGACGAGCGCGGTTCGATTACCGTCGATGAGCGAACCAACAACATCATTGCCTACCAGACCCAGGATCGCCTCGA
CGAACTCCGGCGGATCGTCGCGCAGCTGGATATTCCGGTACGCCAGGTGATGATCGAGGCGCGCATCGTTGAGGCCAACG
TCGATTACGACAAGAGCCTGGGCGTGCGCTGGGGCGGTTCGGTGCAGAACAAGGGCAACTGGAACGCCTCCGGGGTCAAC
GGTTCGTCGAGCACCATCGGTACGCCGGGCAGCACCGGCACCAACTCGCCGTTCGTCGACATGGGCACGGTCAATAACAC
TTCGGGGATCGGCATCGCATTCATCACCGACAACGTGCTGCTGGATCTCGAACTGACGGCGATGGAAAAGACCGGCAACG
GCGAAATCGTCTCGCAGCCGAAAGTGGTCACCTCGGACAAGGAAACCGCGAAGATCCTCAAAGGCACCGAGATTCCCTAT
CAGGAGGCCAGCTCCAGCGGCGCGACCTCGGTGTCGTTCAAGGAGGCTTCGCTGTCACTGGAAGTCACCCCGCAGATCAC
CCCGGACAACCGCATCATCATGGAGGTCAAGGTCACCAAGGATGAGCCCGACTACCTGAACAAAGTGCAGGATGTGCCGC
CGATCAAGAAAAACGAGGTCAACGCCAAAGTGCTGGTAAATGACGGCGAGACCATCGTAATCGGTGGTGTTTTTTCAAAT
ACTCAGAGCAAGGTCGTAGATAAGGTGCCATTTCTTGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGATGTGGT
TTCGGAGAAAAAATCCGAGCTGCTGGTATTTCTCACTCCGCGTATCATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(37-122)

Secretin and TonB N terminus short domain (STN)

(303-349)

Bacterial type II and III secretion system protein (Secretin)

(527-683)

Bacterial type II/III secretion system short domain (Secretin_N)

(377-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

72.207

100

0.747
  comQ Acinetobacter baylyi ADP1

41.643

100

0.418
  pilQ Acinetobacter baumannii D1279779

37.922

100

0.406
  pilQ Acinetobacter baumannii strain A118

37.922

100

0.406
  pilQ Legionella pneumophila strain Lp02

37.997

98.121

0.373
  pilQ Legionella pneumophila strain ERS1305867

37.962

97.832

0.371