Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LOY55_RS01940 Genome accession   NZ_CP087176
Coordinates   420041..422104 (+) Length   687 a.a.
NCBI ID   WP_046031169.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-040     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 415041..427104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY55_RS01920 (LOY55_01920) pilM 417253..418317 (+) 1065 WP_223525454.1 pilus assembly protein PilM Machinery gene
  LOY55_RS01925 (LOY55_01925) - 418317..418883 (+) 567 WP_046031172.1 PilN domain-containing protein -
  LOY55_RS01930 (LOY55_01930) pilO 418880..419503 (+) 624 WP_109785373.1 type 4a pilus biogenesis protein PilO -
  LOY55_RS01935 (LOY55_01935) - 419500..420027 (+) 528 WP_223525453.1 pilus assembly protein PilP -
  LOY55_RS01940 (LOY55_01940) pilQ 420041..422104 (+) 2064 WP_046031169.1 type IV pilus secretin PilQ family protein Machinery gene
  LOY55_RS01945 (LOY55_01945) aroK 422109..422627 (+) 519 WP_046031168.1 shikimate kinase AroK -
  LOY55_RS01950 (LOY55_01950) aroB 422778..423878 (+) 1101 WP_046031167.1 3-dehydroquinate synthase -
  LOY55_RS01955 (LOY55_01955) - 423889..425478 (+) 1590 WP_223525452.1 AAA family ATPase -

Sequence

Protein


Download         Length: 687 a.a.        Molecular weight: 74393.76 Da        Isoelectric Point: 5.3983

>NTDB_id=627347 LOY55_RS01940 WP_046031169.1 420041..422104(+) (pilQ) [Pseudomonas sp. B21-040]
MNRIFSTLGISLWIALLPPMVLATNLKALDVAALPGDRVELKLSFDGPPPAPHGYTTEQPARIALDLPGVVSQLASKSRD
LGGGNARSATVVEAQDRTRLIINLTQLMPYSAKVEGNNLLVVVGQGANSKALKPAASAPRVAMTTPAPAKTYAPASKAIR
GVDFQRGTQGEGNVVIDLSDPSIAPDIRELDGKIILGFARTQLPEQLRVRLDVKDFGTPVQFVNASATGDRATISIEPGG
TFDYSTYQTDNKLTVSIRAMSVEDLQKRNAERMAYIGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQN
VPWDQALDLVLKTKGLDKRKIGNVLLVAPADEIAARERQELESQKQIAELAPLRRELLQVNYAKAADIAKLFQSVTSADA
KADERGSITVDERTNNIIAYQPQDRLDELRRIVTQLDIPVRQVMIEARIVEANVDYDKSLGARWGGSVRNQGNWNTSGVS
NGSSTTPSTNSPFVDLGAAGNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQEASS
SGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGVFSNTQSKV
VDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSH

Nucleotide


Download         Length: 2064 bp        

>NTDB_id=627347 LOY55_RS01940 WP_046031169.1 420041..422104(+) (pilQ) [Pseudomonas sp. B21-040]
ATGAACAGGATTTTCTCAACCCTCGGTATTTCGCTATGGATAGCGTTGTTGCCGCCGATGGTGCTTGCGACCAACCTCAA
AGCGCTGGATGTCGCCGCGCTACCGGGTGATCGCGTCGAGTTGAAGTTGTCTTTCGACGGGCCGCCACCAGCGCCCCACG
GGTATACGACCGAACAACCGGCGCGGATTGCCCTGGACCTGCCCGGCGTGGTCAGTCAGCTGGCGAGCAAGAGTCGTGAC
CTGGGCGGCGGCAATGCCCGCAGTGCAACGGTGGTGGAGGCCCAGGACCGGACGCGGCTCATCATTAACCTGACGCAGTT
GATGCCGTATAGCGCGAAGGTCGAAGGCAACAATCTGTTGGTGGTGGTCGGGCAGGGGGCCAATAGCAAGGCATTGAAAC
CGGCGGCGAGCGCCCCTCGCGTTGCGATGACAACGCCAGCACCGGCAAAAACCTACGCCCCGGCGAGCAAGGCTATTCGC
GGCGTCGACTTCCAGCGCGGCACTCAGGGCGAAGGAAATGTGGTTATCGATCTGTCCGATCCGTCCATCGCACCAGACAT
CCGGGAACTCGACGGCAAAATTATCCTGGGTTTTGCCAGGACCCAATTGCCCGAGCAATTGCGCGTGCGGTTGGACGTCA
AGGATTTCGGCACCCCGGTGCAGTTCGTCAACGCCAGCGCCACCGGCGACCGGGCCACAATCAGCATCGAGCCCGGCGGT
ACCTTCGACTACTCAACTTATCAGACGGACAACAAGCTGACTGTCAGCATCCGGGCGATGAGCGTCGAGGATCTGCAAAA
ACGCAACGCCGAGCGCATGGCCTATATCGGTGAAAAACTTTCGCTGAACTTCCAGGACATCGATGTGCGCTCGGTGCTGC
AACTGATCGCCGACTTCACCAACCTCAATCTCGTGGCCAGCGATACCGTGCAGGGCGGTATCACCTTGCGGTTGCAGAAT
GTGCCGTGGGACCAGGCGCTGGATCTGGTGCTGAAAACCAAGGGGCTGGACAAACGCAAGATCGGCAATGTCCTGTTGGT
GGCGCCTGCCGATGAAATCGCCGCCCGAGAGCGTCAGGAACTGGAATCGCAGAAGCAGATCGCCGAACTGGCGCCGTTGC
GTCGGGAGCTATTGCAGGTCAATTACGCCAAGGCTGCTGATATCGCCAAGCTGTTTCAATCGGTGACCAGCGCCGACGCG
AAAGCCGACGAGCGGGGCTCGATCACGGTGGATGAGCGGACCAACAACATCATTGCCTACCAGCCTCAGGATCGCCTCGA
TGAACTTCGGCGCATTGTTACGCAGCTGGATATCCCGGTGCGCCAGGTCATGATCGAAGCGCGAATCGTCGAAGCCAACG
TCGATTACGACAAAAGCCTCGGCGCGCGCTGGGGTGGTTCGGTGCGCAATCAGGGTAACTGGAACACGTCCGGGGTCTCC
AATGGTTCGTCGACTACCCCCAGCACCAACTCACCGTTTGTCGACCTGGGCGCGGCTGGCAATACGTCGGGCATCGGCAT
CGCATTCATCACCGACAATGTGTTGCTGGATCTGGAGCTGACGGCGATGGAGAAAACCGGCAACGGCGAAATTGTCTCGC
AGCCCAAGGTTGTTACCTCCGACAAGGAAACCGCCAAAATCCTCAAGGGCACGGAGATTCCCTATCAGGAGGCCAGTTCC
AGTGGCGCGACCTCGGTGTCATTCAAGGAGGCCTCGCTGTCTCTGGAAGTGACACCGCAGATCACGCCGGACAACCGGAT
CATCATGGAGGTCAAGGTCACCAAGGACGAACCGGACTACCTGAACAAAGTGCAGGATGTACCGCCGATCAAGAAAAACG
AGGTCAATGCCAAGGTCCTGGTCAACGACGGCGAGACCATCGTTATTGGCGGCGTTTTCTCAAATACTCAAAGCAAGGTA
GTAGATAAGGTGCCATTTCTTGGTGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGACGTGGTTTCGGAGAAAAAATC
CGAGCTGCTGGTATTTCTCACTCCGCGTATCATGAACAATCAGGCGATTGCTGTGAGTCATTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(522-678)

AMIN domain (AMIN)

(37-121)

Secretin and TonB N terminus short domain (STN)

(303-349)

Bacterial type II/III secretion system short domain (Secretin_N)

(377-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

72.308

100

0.753
  comQ Acinetobacter baylyi ADP1

40.548

100

0.409
  pilQ Acinetobacter baumannii strain A118

36.87

100

0.405
  pilQ Acinetobacter baumannii D1279779

36.87

100

0.405
  pilQ Legionella pneumophila strain Lp02

38.279

98.108

0.376
  pilQ Legionella pneumophila strain ERS1305867

38.131

98.108

0.374