Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LOY52_RS02045 Genome accession   NZ_CP087166
Coordinates   462219..464297 (+) Length   692 a.a.
NCBI ID   WP_258677992.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-051     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 457219..469297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY52_RS02025 (LOY52_02025) pilM 459431..460495 (+) 1065 WP_258677990.1 pilus assembly protein PilM Machinery gene
  LOY52_RS02030 (LOY52_02030) - 460495..461061 (+) 567 WP_258677991.1 PilN domain-containing protein -
  LOY52_RS02035 (LOY52_02035) pilO 461058..461681 (+) 624 WP_027611313.1 type 4a pilus biogenesis protein PilO -
  LOY52_RS02040 (LOY52_02040) - 461678..462205 (+) 528 WP_027611314.1 pilus assembly protein PilP -
  LOY52_RS02045 (LOY52_02045) pilQ 462219..464297 (+) 2079 WP_258677992.1 type IV pilus secretin PilQ Machinery gene
  LOY52_RS02050 (LOY52_02050) aroK 464302..464820 (+) 519 WP_027611316.1 shikimate kinase AroK -
  LOY52_RS02055 (LOY52_02055) aroB 464972..466072 (+) 1101 WP_027611317.1 3-dehydroquinate synthase -
  LOY52_RS02060 (LOY52_02060) - 466083..467672 (+) 1590 WP_123585560.1 AAA family ATPase -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 75123.43 Da        Isoelectric Point: 5.5724

>NTDB_id=627083 LOY52_RS02045 WP_258677992.1 462219..464297(+) (pilQ) [Pseudomonas sp. B21-051]
MNRIFSTLGFSLWIALLSPMVQAASLKTLDVAALPGDRIELKLSFDSPPPQPKGYTTESPARIALDLPGVASQLTNKTRD
LGSGNARTATVVEANDRTRLIINLTQLTPYTSRVEGNNLFVVVGQGAKPAAPRPAAVAPRPVAAPAPAKAYTPVAKTIRG
VDFQRGTAGEGNVVIDLSDPTIAPDIQEHDGKIILSFARTQLPDRLRVRLDVKDFATPVQFVNAAATGDRAVITVEPSGT
FDYSTYQTDNKLTVSIRPMTVDDLQKRNADRNSYSGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQNV
PWDQALDLVLKTKGLDKRKIGNVLLVAPADEIAARERQELESQKQIAELAPLRRELLQVNYAKAADIAKLFQSVTSAEAK
IDERGSITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSIQNKGNWNTSGVSN
GSSTTIGTPGSTSTNSPFVDMGTVGNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPY
QEASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGVFSN
TQSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=627083 LOY52_RS02045 WP_258677992.1 462219..464297(+) (pilQ) [Pseudomonas sp. B21-051]
ATGAACAGGATTTTCTCCACCCTCGGTTTTTCGCTATGGATAGCGCTGCTTTCACCGATGGTTCAGGCGGCCAGCCTCAA
GACGCTGGATGTCGCGGCGTTACCGGGTGATCGCATCGAGTTGAAGCTGTCGTTCGACAGCCCGCCACCGCAACCCAAGG
GCTACACCACCGAATCGCCGGCGCGAATCGCCCTGGATCTGCCGGGTGTCGCCAGCCAACTGACGAACAAGACCCGCGAT
CTGGGCAGCGGCAACGCGCGAACCGCTACAGTGGTCGAGGCCAACGACCGTACGCGTTTGATCATCAACCTGACGCAACT
GACGCCCTACACCTCGCGGGTCGAGGGCAACAATCTGTTCGTGGTGGTCGGGCAGGGCGCCAAGCCTGCTGCGCCACGGC
CAGCCGCTGTTGCGCCGCGACCGGTCGCGGCTCCAGCGCCGGCGAAGGCTTATACCCCCGTCGCCAAAACCATTCGTGGC
GTCGACTTCCAGCGCGGCACTGCGGGGGAGGGCAACGTCGTCATCGACCTGTCGGATCCGACCATCGCCCCGGACATCCA
GGAGCATGACGGCAAGATCATCCTGAGCTTTGCCCGCACGCAGTTGCCCGACAGGCTGCGGGTGCGCCTCGACGTCAAGG
ACTTCGCCACGCCGGTGCAGTTCGTCAACGCTGCCGCCACCGGTGATCGTGCGGTCATCACCGTCGAACCCAGCGGCACG
TTCGACTATTCCACCTACCAGACCGACAACAAACTGACCGTCAGTATTCGCCCAATGACGGTCGATGACCTGCAAAAGCG
CAACGCTGACCGCAACAGCTACAGCGGCGAAAAACTTTCGCTGAATTTCCAGGACATCGACGTGCGTTCGGTGCTGCAAC
TGATCGCCGACTTCACCAACCTCAATCTGGTGGCCAGCGATACGGTGCAGGGCGGGATCACCTTGCGTTTGCAAAACGTG
CCGTGGGATCAGGCGCTGGACCTGGTGCTGAAAACCAAGGGGCTGGATAAACGCAAGATCGGCAACGTGTTGCTGGTGGC
GCCGGCCGACGAAATCGCCGCCCGCGAGCGCCAGGAACTGGAGTCGCAGAAACAGATCGCCGAACTGGCACCGCTGCGCC
GCGAGCTGCTGCAAGTGAATTACGCCAAGGCCGCGGACATCGCCAAGCTGTTCCAGTCGGTGACCAGTGCCGAGGCGAAA
ATCGACGAGCGTGGCTCGATTACTGTCGATGAGCGCACCAACAACATCATTGCCTACCAGACCCAGGATCGCCTCGACGA
ACTGCGGCGGATCGTGGCTCAACTGGATATTCCGGTGCGCCAGGTGATGATCGAGGCGCGGATCGTCGAGGCCAACGTCG
ATTACGACAAGAGCCTGGGCGTGCGCTGGGGCGGCTCGATCCAGAACAAGGGCAACTGGAACACCTCGGGGGTCAGCAAT
GGCTCGTCGACCACTATCGGCACACCGGGCAGTACCAGTACCAACTCGCCGTTCGTCGACATGGGCACGGTCGGTAATAC
CTCGGGGATCGGCATCGCCTTCATCACCGACAATGTGCTGCTCGATCTTGAGCTGACCGCCATGGAGAAGACCGGCAACG
GTGAAATTGTCTCGCAGCCCAAAGTAGTCACCTCCGACAAGGAGACGGCAAAGATACTCAAAGGGACCGAGATTCCGTAT
CAGGAAGCCAGCTCCAGCGGTGCGACGTCGGTGTCGTTCAAGGAGGCTTCGCTGTCGCTGGAAGTGACGCCGCAGATCAC
CCCCGACAACCGCATCATCATGGAGGTCAAGGTCACCAAGGATGAGCCGGACTACCTGAACAAGGTGCAGGATGTGCCGC
CGATCAAGAAGAACGAGGTCAACGCCAAGGTGCTGGTGAACGACGGCGAGACCATCGTGATTGGGGGCGTTTTCTCAAAT
ACTCAAAGCAAGGTCGTAGATAAGGTGCCATTTCTTGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGATGTGGT
TTCGGAGAAAAAATCCGAGCTGCTGGTATTTCTCACTCCGCGTATCATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(527-683)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-441)

Secretin and TonB N terminus short domain (STN)

(302-348)

AMIN domain (AMIN)

(37-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

73.147

100

0.756
  comQ Acinetobacter baylyi ADP1

40.981

100

0.41
  pilQ Acinetobacter baumannii strain A118

37.668

100

0.406
  pilQ Acinetobacter baumannii D1279779

37.668

100

0.406
  pilQ Legionella pneumophila strain ERS1305867

37.593

97.254

0.366
  pilQ Legionella pneumophila strain Lp02

37.593

97.254

0.366