Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   VIBNI_RS11435 Genome accession   NC_022528
Coordinates   2575717..2576037 (-) Length   106 a.a.
NCBI ID   WP_022551233.1    Uniprot ID   U4KDA9
Organism   Vibrio nigripulchritudo     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2570717..2581037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBNI_RS11410 (VIBNI_A2416) - 2571138..2572352 (+) 1215 WP_004406192.1 pyridoxal phosphate-dependent aminotransferase -
  VIBNI_RS11415 (VIBNI_A2417) yfbR 2572500..2573084 (+) 585 WP_004406194.1 5'-deoxynucleotidase -
  VIBNI_RS11420 (VIBNI_A2418) - 2573133..2574452 (+) 1320 WP_022551230.1 anti-phage deoxyguanosine triphosphatase -
  VIBNI_RS11425 (VIBNI_A2419) - 2574485..2575105 (-) 621 WP_038200255.1 DTW domain-containing protein -
  VIBNI_RS11430 (VIBNI_A2420) rrtA 2575094..2575660 (+) 567 WP_022609628.1 rhombosortase -
  VIBNI_RS11435 (VIBNI_A2421) comEA 2575717..2576037 (-) 321 WP_022551233.1 ComEA family DNA-binding protein Machinery gene
  VIBNI_RS11440 (VIBNI_A2423) ppiD 2576164..2578035 (-) 1872 WP_022551234.1 peptidylprolyl isomerase -
  VIBNI_RS11450 (VIBNI_A2425) - 2578363..2578635 (-) 273 WP_004406206.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11208.93 Da        Isoelectric Point: 9.8209

>NTDB_id=62576 VIBNI_RS11435 WP_022551233.1 2575717..2576037(-) (comEA) [Vibrio nigripulchritudo]
MKIIKLALIAALSLCSAVSANAWESNSPSKAASSSDKHAGIEITVNINTATAEELQTLLIGIGAKKAKTIVEFREKNGLF
QSADDLSKVKGIGNATVDKNRDRILL

Nucleotide


Download         Length: 321 bp        

>NTDB_id=62576 VIBNI_RS11435 WP_022551233.1 2575717..2576037(-) (comEA) [Vibrio nigripulchritudo]
ATGAAAATCATAAAACTGGCTTTGATAGCAGCTCTTTCTCTTTGCTCTGCCGTTTCGGCAAACGCGTGGGAGTCAAATTC
GCCATCTAAAGCGGCTTCAAGCAGTGATAAGCATGCCGGAATAGAAATTACCGTAAACATCAATACAGCGACCGCTGAGG
AGCTACAAACGCTTTTAATCGGCATAGGTGCAAAGAAGGCGAAAACCATCGTTGAGTTTCGTGAAAAGAACGGGTTATTT
CAGTCTGCAGACGATTTGAGTAAAGTGAAGGGTATTGGCAACGCTACTGTTGACAAGAATCGTGACCGAATTCTGCTGTA
G

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(44-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U4KDA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae strain A1552

56.122

92.453

0.519
  comEA Vibrio cholerae C6706

56.122

92.453

0.519
  comEA Vibrio campbellii strain DS40M4

56.842

89.623

0.509
  comE1/comEA Haemophilus influenzae Rd KW20

44.037

100

0.453
  comEA Vibrio parahaemolyticus RIMD 2210633

61.842

71.698

0.443
  comEA Acinetobacter baylyi ADP1

50

75.472

0.377
  comEA/comE1 Glaesserella parasuis strain SC1401

62.903

58.491

0.368

Multiple sequence alignment