Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LK342_RS02525 Genome accession   NZ_CP086574
Coordinates   546882..548246 (+) Length   454 a.a.
NCBI ID   WP_031787934.1    Uniprot ID   A0A7U7JST8
Organism   Staphylococcus argenteus strain RIVM_M046968     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 541882..553246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK342_RS02505 (LK342_02505) - 541891..542352 (+) 462 WP_000551760.1 CtsR family transcriptional regulator -
  LK342_RS02510 (LK342_02510) - 542371..542937 (+) 567 WP_047526084.1 UvrB/UvrC motif-containing protein -
  LK342_RS02515 (LK342_02515) - 542927..543934 (+) 1008 WP_014373784.1 protein arginine kinase -
  LK342_RS02520 (LK342_02520) - 543949..546405 (+) 2457 WP_000897144.1 ATP-dependent Clp protease ATP-binding subunit -
  LK342_RS02525 (LK342_02525) radA 546882..548246 (+) 1365 WP_031787934.1 DNA repair protein RadA Machinery gene
  LK342_RS02530 (LK342_02530) - 548271..549344 (+) 1074 WP_001028364.1 PIN/TRAM domain-containing protein -
  LK342_RS02535 (LK342_02535) gltX 549834..551288 (+) 1455 WP_031787935.1 glutamate--tRNA ligase -
  LK342_RS02540 (LK342_02540) cysE 551705..552352 (+) 648 WP_072291959.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49820.30 Da        Isoelectric Point: 7.0049

>NTDB_id=625568 LK342_RS02525 WP_031787934.1 546882..548246(+) (radA) [Staphylococcus argenteus strain RIVM_M046968]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKTKEIAGKVQKLNSIKHETTPRVLTDSAEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKKKVLYITGEESLNQTKLRAERLDEDSSELQVLAETDLEVIYQTVK
EEQPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVNNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRAIIPKNNIGGWTYPEGIQVIGVTSVHEALSFALHS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=625568 LK342_RS02525 WP_031787934.1 546882..548246(+) (radA) [Staphylococcus argenteus strain RIVM_M046968]
TTGGCCAAGAAAAAAGTGATTTTTGAATGTATGGCTTGTGGTTATCAATCTCCTAAATGGATGGGGAAATGTCCCAATTG
TGGTGCTTGGAATCAAATGGAGGAAATTGTTGAAAAAGCTGCCAATCCAAAGCATGGAGTAAAAACAAAAGAAATAGCTG
GTAAAGTACAAAAACTAAATAGTATTAAACATGAAACGACACCTAGAGTATTAACGGATTCTGCAGAATTCAACCGCGTA
TTAGGTGGCGGAATTGTTAGCGGATCACTGGTCCTGATAGGTGGAGATCCAGGTATTGGTAAGTCAACGTTACTTTTACA
AATTTGTGCTTCTTTATCACAAAAGAAAAAAGTGTTATATATTACTGGGGAAGAATCCCTTAATCAAACGAAACTTCGAG
CAGAGCGTTTAGATGAAGACTCTAGTGAATTACAAGTATTAGCAGAAACAGATTTAGAAGTTATATATCAGACAGTTAAA
GAAGAACAACCAGACTTACTAGTAGTTGATTCTATTCAAACGATTTATCACCCTGAAATTAGTTCGGCACCGGGTTCTGT
TTCACAAGTTCGTGAAAGTACACAAAGTTTAATGAACATTGCTAAACAAATGAATATTGCAACTTTTATTGTTGGACATG
TAACGAAAGAAGGTCAAATTGCAGGTCCTAGATTATTGGAACATATGGTAGATACAGTGCTTTATTTTGAAGGTGATGAA
CATCATGCATATCGAATTTTACGTGCTGTTAAAAACCGTTTTGGCTCTACAAATGAAATGGGTATTTTTGAAATGAAACA
AAGCGGATTAAAAGGTGTTAATAATCCGTCTGAAATGTTTTTAGAAGAACGTTCTACAAATGTTCCTGGGTCTACAATTG
TTGCAACAATGGAAGGTACAAGACCACTTTTAATAGAAGTACAAGCGCTTGTGACACCGACAACATTTAATAATCCAAGA
AGAATGGCAACGGGAATTGATCATAATCGACTTAGTTTACTAATGGCTGTTTTAGAAAAGAAAGAAAATTATTTATTACA
GCAACAAGATGCTTATATCAAAGTCGCAGGTGGTGTGAAATTAACAGAGCCAGCTGTTGATTTAAGTGTAATTGTGGCTA
CCGCATCAAGCTTTAAAGATAAAGCAGTTGATGGTTTAGATTGTTACATTGGAGAAGTTGGTTTAACGGGTGAGGTACGT
CGCGTATCTCGGATAGAGCAACGCGTACAAGAAGCTGCAAAGTTAGGCTTCAAACGTGCAATTATTCCTAAAAATAATAT
TGGCGGATGGACATATCCAGAAGGGATTCAAGTAATTGGCGTAACTTCTGTACATGAAGCACTATCATTCGCTCTACATT
CATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(77-218)

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7JST8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.674
  radA Streptococcus pneumoniae Rx1

61.83

98.678

0.61
  radA Streptococcus pneumoniae D39

61.83

98.678

0.61
  radA Streptococcus pneumoniae R6

61.83

98.678

0.61
  radA Streptococcus pneumoniae TIGR4

61.83

98.678

0.61
  radA Streptococcus mitis NCTC 12261

61.83

98.678

0.61
  radA Streptococcus mitis SK321

61.83

98.678

0.61