Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LK342_RS02565 Genome accession   NZ_CP086574
Coordinates   555492..556061 (+) Length   189 a.a.
NCBI ID   WP_047526087.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain RIVM_M046968     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 550492..561061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK342_RS02540 (LK342_02540) cysE 551705..552352 (+) 648 WP_072291959.1 serine O-acetyltransferase -
  LK342_RS02545 (LK342_02545) cysS 552336..553736 (+) 1401 WP_047526085.1 cysteine--tRNA ligase -
  LK342_RS02550 (LK342_02550) - 553729..554133 (+) 405 WP_047526086.1 Mini-ribonuclease 3 -
  LK342_RS02555 (LK342_02555) rlmB 554141..554887 (+) 747 WP_000390335.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LK342_RS02560 (LK342_02560) - 554887..555411 (+) 525 WP_000664733.1 NYN domain-containing protein -
  LK342_RS02565 (LK342_02565) sigH 555492..556061 (+) 570 WP_047526087.1 RNA polymerase sigma factor Regulator
  LK342_RS02570 (LK342_02570) rpmG 556177..556320 (+) 144 WP_014373786.1 50S ribosomal protein L33 -
  LK342_RS02575 (LK342_02575) secE 556376..556558 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  LK342_RS02580 (LK342_02580) nusG 556571..557119 (+) 549 WP_001288299.1 transcription termination/antitermination protein NusG -
  LK342_RS02585 (LK342_02585) rplK 557300..557722 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  LK342_RS02590 (LK342_02590) rplA 557930..558622 (+) 693 WP_001074615.1 50S ribosomal protein L1 -
  LK342_RS02595 (LK342_02595) rplJ 558894..559394 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  LK342_RS02600 (LK342_02600) rplL 559438..559806 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  LK342_RS02605 (LK342_02605) - 559994..560602 (+) 609 WP_000020309.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23004.94 Da        Isoelectric Point: 9.4799

>NTDB_id=625569 LK342_RS02565 WP_047526087.1 555492..556061(+) (sigH) [Staphylococcus argenteus strain RIVM_M046968]
MKRCISVHNNVEKHSNIVDDNEFEKLITDLKPLIIRRMKRFGFKYHDLEDLYQEILIKIYRATKTFDFTGEQPFVNYVQC
LITSVKYDYLRKCLASSRRMDSLVNEYKVIYPCALKYHDIERNYLNKLNVRELICQFKYLSAFEKEVMYFICDQYKPREI
AQLMNVKEKTIYNAIQRCKSKIRQHFKMF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=625569 LK342_RS02565 WP_047526087.1 555492..556061(+) (sigH) [Staphylococcus argenteus strain RIVM_M046968]
TTGAAAAGATGTATATCAGTGCATAATAATGTTGAAAAACACAGCAATATAGTTGACGATAATGAATTTGAAAAGTTAAT
AACAGATTTGAAACCATTAATCATTCGACGTATGAAAAGGTTTGGTTTTAAATACCATGATTTGGAAGATTTATATCAAG
AGATACTAATAAAGATATATAGGGCAACTAAAACATTCGATTTTACAGGTGAGCAACCATTCGTGAATTATGTTCAATGT
TTAATCACTTCAGTTAAATACGATTATCTAAGGAAGTGTTTAGCATCTTCTAGAAGAATGGATAGTTTAGTAAATGAATA
TAAAGTTATATATCCTTGTGCATTAAAGTATCATGACATTGAAAGAAACTATTTAAATAAACTGAATGTCAGAGAGTTGA
TTTGTCAATTTAAATATTTAAGTGCATTTGAAAAAGAAGTAATGTATTTTATATGCGACCAATATAAACCGAGAGAGATT
GCCCAATTGATGAATGTTAAAGAAAAAACTATTTATAATGCAATTCAACGGTGTAAAAGTAAAATAAGACAGCATTTTAA
AATGTTTTAA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

69.149

99.471

0.688
  sigH Staphylococcus aureus MW2

68.085

99.471

0.677