Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   NYS58_RS30055 Genome accession   NZ_CP103790
Coordinates   6347494..6348018 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain 8247     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6342494..6353018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYS58_RS30040 aroB 6343622..6344728 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  NYS58_RS30045 aroK 6344778..6345296 (-) 519 WP_003095833.1 shikimate kinase AroK -
  NYS58_RS30050 pilQ 6345308..6347440 (-) 2133 WP_003141780.1 type 4a pilus secretin PilQ Machinery gene
  NYS58_RS30055 comL/pilP 6347494..6348018 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  NYS58_RS30060 pilO 6348015..6348638 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  NYS58_RS30065 pilN 6348635..6349231 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  NYS58_RS30070 pilM 6349231..6350295 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  NYS58_RS30075 - 6350480..6352951 (+) 2472 WP_003141786.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=625569 NYS58_RS30055 WP_003116136.1 6347494..6348018(-) (comL/pilP) [Pseudomonas aeruginosa strain 8247]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=625569 NYS58_RS30055 WP_003116136.1 6347494..6348018(-) (comL/pilP) [Pseudomonas aeruginosa strain 8247]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAC
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCAGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GACGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362