Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   LK336_RS04840 Genome accession   NZ_CP086572
Coordinates   1006832..1007401 (+) Length   189 a.a.
NCBI ID   WP_000287261.1    Uniprot ID   A0A7U7JTQ7
Organism   Staphylococcus argenteus strain RIVM_M036020     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1001832..1012401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK336_RS04805 (LK336_04805) - 1003057..1003338 (-) 282 Protein_920 lactococcin 972 family bacteriocin -
  LK336_RS04810 (LK336_04810) - 1003362..1003430 (-) 69 WP_225995266.1 hypothetical protein -
  LK336_RS04820 (LK336_04815) - 1004349..1004951 (-) 603 WP_031787353.1 CPBP family glutamic-type intramembrane protease -
  LK336_RS04825 (LK336_04820) - 1004966..1005142 (-) 177 WP_000214898.1 YkvS family protein -
  LK336_RS04830 (LK336_04825) - 1005337..1006323 (+) 987 WP_000668810.1 lipoate--protein ligase -
  LK336_RS04835 (LK336_04830) - 1006404..1006622 (-) 219 WP_000876831.1 IDEAL domain-containing protein -
  LK336_RS04840 (LK336_04835) comK/comK1 1006832..1007401 (+) 570 WP_000287261.1 competence protein ComK Regulator
  LK336_RS04855 (LK336_04850) - 1007893..1009401 (-) 1509 WP_031787352.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  LK336_RS04860 (LK336_04855) - 1009540..1010898 (-) 1359 WP_000021861.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22637.86 Da        Isoelectric Point: 9.6092

>NTDB_id=625538 LK336_RS04840 WP_000287261.1 1006832..1007401(+) (comK/comK1) [Staphylococcus argenteus strain RIVM_M036020]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQHENIWLNMHYIENIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMVS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=625538 LK336_RS04840 WP_000287261.1 1006832..1007401(+) (comK/comK1) [Staphylococcus argenteus strain RIVM_M036020]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGATGATCAAAGAAA
TGGTAGTGAAATTATCCGGTTTGATAAAACGCGTATACAAAATCCATTTAAAGTCCAGAAAATCATAGAACGCTCTTGCA
AATTTTATGGTAATACATACCTTGGCAAGAAAGCAGAAACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCCTTATTTCCAACTTATTTTTTCCCAACTCATTCTGACAGACAACACGAAAACATTTGGCTAAATATGCATTA
TATAGAAAATATTAAAGAATTAAAAAATCGTAAATGTAAAGTAACTTTTATTAATAACGAATCAATTATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTACTATATGGTAGATAAACAATCTCGTATGGTTTCT
AAAAATCCCGATCAACCTATAGATTATAATAAAGCCACATTAAACGTATTTGAAGCATTAACACGTTATTCCCTATTCGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7JTQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

98.413

100

0.984
  comK/comK1 Staphylococcus aureus N315

98.413

100

0.984