Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   N288_RS22515 Genome accession   NC_022524
Coordinates   4564393..4564974 (-) Length   193 a.a.
NCBI ID   WP_009794366.1    Uniprot ID   U5LJ32
Organism   Bacillus infantis NRRL B-14911     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4559393..4569974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N288_RS22495 (N288_24185) - 4560154..4561020 (-) 867 WP_022544525.1 Cof-type HAD-IIB family hydrolase -
  N288_RS22500 (N288_24190) - 4561081..4561743 (-) 663 WP_009794363.1 DNA alkylation repair protein -
  N288_RS22505 (N288_24195) - 4561958..4563475 (+) 1518 WP_009794364.1 BCCT family transporter -
  N288_RS22510 (N288_24200) - 4563532..4564257 (-) 726 WP_022544526.1 hypothetical protein -
  N288_RS22515 (N288_24205) clpP 4564393..4564974 (-) 582 WP_009794366.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  N288_RS22520 (N288_24210) - 4564998..4565681 (-) 684 WP_022544527.1 sigma-70 family RNA polymerase sigma factor -
  N288_RS22525 (N288_24215) - 4565927..4566826 (-) 900 WP_009794368.1 SDR family oxidoreductase -
  N288_RS22530 (N288_24220) - 4566977..4568296 (+) 1320 WP_009794369.1 short-chain fatty acid transporter -
  N288_RS22535 (N288_24225) - 4568468..4569235 (+) 768 WP_009794370.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21259.36 Da        Isoelectric Point: 5.6770

>NTDB_id=62528 N288_RS22515 WP_009794366.1 4564393..4564974(-) (clpP) [Bacillus infantis NRRL B-14911]
MTAIPYVIEQSSRGERSYDIYSRLLKDRIIMIGEEINDHVANSVIAQLLFLAADAPDKDISLYINSPGGSTTAGFAIYDT
MQYIKPDVRTICTGMAASFGAMLLLAGTKGKRCSLPNSEIMIHQPLGGARGQATEIEISAKRILKLREHINGIISEKTGQ
PVEKVARDTDRDYFMSAEEAKEYGIIDTIIFHS

Nucleotide


Download         Length: 582 bp        

>NTDB_id=62528 N288_RS22515 WP_009794366.1 4564393..4564974(-) (clpP) [Bacillus infantis NRRL B-14911]
ATGACGGCAATACCATATGTAATTGAACAGTCGAGCAGGGGCGAGCGCTCCTATGATATCTATTCACGGCTTCTGAAGGA
CAGGATCATCATGATTGGAGAAGAAATCAATGATCACGTGGCAAACAGTGTGATTGCCCAGCTTCTGTTTCTTGCCGCAG
ATGCGCCAGACAAGGATATATCGCTTTATATCAATAGCCCGGGCGGATCCACAACAGCAGGCTTTGCAATTTATGACACT
ATGCAGTACATCAAGCCTGACGTCAGGACAATCTGCACGGGTATGGCCGCTTCCTTCGGTGCGATGCTCCTGCTCGCCGG
CACGAAAGGCAAGCGCTGCAGCCTGCCAAACAGCGAAATCATGATCCATCAGCCGCTCGGCGGGGCCAGGGGGCAGGCAA
CTGAAATTGAAATATCCGCGAAACGCATTCTGAAGCTCCGGGAGCATATCAACGGAATCATTTCCGAAAAAACGGGCCAG
CCTGTTGAAAAAGTGGCCAGGGATACAGACCGCGACTATTTCATGAGCGCCGAAGAAGCGAAAGAATACGGGATTATCGA
TACTATCATCTTTCATAGCTGA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U5LJ32

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

72.021

100

0.72
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.947

98.446

0.679
  clpP Streptococcus thermophilus LMG 18311

57.812

99.482

0.575
  clpP Streptococcus thermophilus LMD-9

57.812

99.482

0.575
  clpP Streptococcus pneumoniae D39

58.201

97.927

0.57
  clpP Streptococcus pneumoniae Rx1

58.201

97.927

0.57
  clpP Streptococcus pneumoniae R6

58.201

97.927

0.57
  clpP Streptococcus pneumoniae TIGR4

58.201

97.927

0.57
  clpP Streptococcus pyogenes JRS4

56.614

97.927

0.554
  clpP Streptococcus pyogenes MGAS315

56.614

97.927

0.554
  clpP Lactococcus lactis subsp. cremoris KW2

55.556

97.927

0.544
  clpP Streptococcus mutans UA159

53.927

98.964

0.534
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

53.968

97.927

0.528

Multiple sequence alignment