Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   LMK00_RS01780 Genome accession   NZ_CP086395
Coordinates   361943..362542 (-) Length   199 a.a.
NCBI ID   WP_003134020.1    Uniprot ID   -
Organism   Lactococcus formosensis strain I4/6O     
Function   degradation of ComX; degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 356943..367542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMK00_RS01770 (LMK00_01770) - 356999..358222 (+) 1224 WP_165711446.1 FtsW/RodA/SpoVE family cell cycle protein -
  LMK00_RS01775 (LMK00_01775) - 358423..361842 (+) 3420 WP_252175580.1 pyruvate carboxylase -
  LMK00_RS01780 (LMK00_01780) clpP 361943..362542 (-) 600 WP_003134020.1 ATP-dependent Clp protease proteolytic subunit Regulator
  LMK00_RS01785 (LMK00_01785) - 362744..363904 (-) 1161 WP_252170103.1 IS110 family transposase -
  LMK00_RS01790 (LMK00_01790) - 364251..364628 (+) 378 WP_017368813.1 VOC family protein -
  LMK00_RS01795 (LMK00_01795) - 364688..365218 (+) 531 WP_017368814.1 hypothetical protein -
  LMK00_RS01800 (LMK00_01800) spx 365379..365777 (+) 399 WP_003134024.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21787.90 Da        Isoelectric Point: 4.7242

>NTDB_id=624735 LMK00_RS01780 WP_003134020.1 361943..362542(-) (clpP) [Lactococcus formosensis strain I4/6O]
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGQVEDGMANSIIAQLLFLDAQDSTKDIYLYINTPGGSVSAGLAIVD
TMNFIKSDVQTIVMGIAASMGTIIASSGTKGKRFMLPHAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRRTLEKILAEN
SGQSMEKVHADAERDNWMTAQETLDYGFIDEIMEANSLK

Nucleotide


Download         Length: 600 bp        

>NTDB_id=624735 LMK00_RS01780 WP_003134020.1 361943..362542(-) (clpP) [Lactococcus formosensis strain I4/6O]
ATGGGATATTTAGTACCTACTGTCATCGAGCAATCAAGCCGTGGTGAACGCGCATATGACATTTACAGCCGTCTACTGAA
AGACCGTATCATCATGTTGACAGGCCAAGTTGAGGATGGTATGGCCAACTCAATCATCGCACAACTCCTCTTCTTGGATG
CCCAAGACAGCACAAAGGACATTTACCTCTATATTAATACACCTGGTGGTTCTGTATCTGCTGGACTTGCGATTGTAGAT
ACCATGAACTTCATCAAGTCAGATGTTCAAACAATCGTTATGGGTATCGCTGCATCTATGGGTACAATCATTGCTTCTAG
TGGTACAAAAGGTAAACGTTTCATGTTGCCACATGCAGAATACATGATTCACCAACCTATGGGAGGTACTGGTGGCGGCA
CACAACAAACAGATATGGCTATTGCTGCGGAACATTTGCTTAAAACACGTCGTACTTTAGAAAAGATTTTGGCAGAAAAC
TCTGGTCAATCTATGGAAAAAGTACATGCCGATGCAGAACGTGATAACTGGATGACTGCACAAGAAACATTAGACTATGG
TTTCATTGATGAAATCATGGAAGCCAACAGCTTGAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pneumoniae Rx1

89.796

98.492

0.884
  clpP Streptococcus pneumoniae D39

89.796

98.492

0.884
  clpP Streptococcus pneumoniae R6

89.796

98.492

0.884
  clpP Streptococcus pneumoniae TIGR4

89.796

98.492

0.884
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

87.94

100

0.879
  clpP Lactococcus lactis subsp. cremoris KW2

87.437

100

0.874
  clpP Streptococcus thermophilus LMG 18311

87.755

98.492

0.864
  clpP Streptococcus thermophilus LMD-9

87.755

98.492

0.864
  clpP Streptococcus pyogenes JRS4

84.184

98.492

0.829
  clpP Streptococcus pyogenes MGAS315

84.184

98.492

0.829
  clpP Streptococcus mutans UA159

84.184

98.492

0.829
  clpP Bacillus subtilis subsp. subtilis str. 168

58.421

95.477

0.558
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.995

96.985

0.553