Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   LMD38_RS13120 Genome accession   NZ_CP086328
Coordinates   2502019..2502600 (+) Length   193 a.a.
NCBI ID   WP_000991618.1    Uniprot ID   -
Organism   Bacillus pacificus strain anQ-h4     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2497019..2507600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMD38_RS13090 (LMD38_13090) - 2497498..2498142 (+) 645 WP_012644441.1 SUMF1/EgtB/PvdO family nonheme iron enzyme -
  LMD38_RS13095 (LMD38_13095) - 2498198..2499391 (+) 1194 WP_000124907.1 macrolide family glycosyltransferase -
  LMD38_RS13100 (LMD38_13100) - 2499640..2500074 (-) 435 WP_000555726.1 GNAT family N-acetyltransferase -
  LMD38_RS13105 (LMD38_13105) rpiA 2500180..2500842 (-) 663 WP_001050000.1 ribose 5-phosphate isomerase A -
  LMD38_RS13110 (LMD38_13110) - 2500847..2501167 (-) 321 WP_001125397.1 2Fe-2S iron-sulfur cluster-binding protein -
  LMD38_RS13115 (LMD38_13115) - 2501311..2501997 (+) 687 WP_000337484.1 RNA polymerase subunit sigma-70 -
  LMD38_RS13120 (LMD38_13120) clpP 2502019..2502600 (+) 582 WP_000991618.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  LMD38_RS13125 (LMD38_13125) - 2502645..2503502 (-) 858 WP_001227648.1 glycine betaine ABC transporter substrate-binding protein -
  LMD38_RS13130 (LMD38_13130) - 2503674..2504879 (+) 1206 WP_000370623.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  LMD38_RS13135 (LMD38_13135) - 2504872..2505708 (+) 837 WP_001084762.1 proline/glycine betaine ABC transporter permease -
  LMD38_RS13140 (LMD38_13140) - 2506005..2506091 (+) 87 Protein_2606 septum formation initiator -
  LMD38_RS13145 (LMD38_13145) - 2506215..2506700 (+) 486 WP_029141132.1 HIT family protein -
  LMD38_RS13150 (LMD38_13150) - 2506684..2507508 (+) 825 WP_061182563.1 PP2C family serine/threonine-protein phosphatase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21208.52 Da        Isoelectric Point: 5.0972

>NTDB_id=624307 LMD38_RS13120 WP_000991618.1 2502019..2502600(+) (clpP) [Bacillus pacificus strain anQ-h4]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIRPDVQTLCMGLAASFGALLLLAGAKGKRFALPNSEIMIHQPLGGVKGQATEIEITAKRILKLKHDINKIIADRTGQ
PIEKIAHDTERDYFMTAEEAKEYGIVDGVVEKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=624307 LMD38_RS13120 WP_000991618.1 2502019..2502600(+) (clpP) [Bacillus pacificus strain anQ-h4]
ATGAATGCAATTCCATATGTAGTAGAACAAACAAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTGAAAGA
CCGCATTATTATAATCGGTTCAGAGATTAATGATCAGGTTGCGAGCAGTGTAGTAGCGCAATTATTATTTTTAGAAGCGG
AAGATGCGGAGAAAGATATATTTCTGTATATTAATAGTCCTGGCGGCTCAACGACAGCAGGATTTGCAATATTAGATACA
ATGAATCTTATTAGACCGGATGTGCAAACGCTTTGTATGGGCTTAGCTGCATCATTTGGTGCCCTTTTACTATTAGCTGG
TGCAAAAGGAAAAAGATTCGCGCTTCCTAATAGTGAAATCATGATTCATCAGCCACTTGGCGGTGTAAAAGGGCAAGCAA
CAGAAATCGAAATTACAGCAAAAAGAATATTGAAATTGAAGCATGACATTAATAAGATTATTGCTGATAGAACAGGACAG
CCAATCGAAAAAATAGCACATGATACGGAAAGAGATTATTTTATGACAGCAGAGGAAGCTAAAGAATATGGGATTGTTGA
TGGGGTCGTTGAGAAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.421

98.446

0.674
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.783

97.927

0.674
  clpP Streptococcus thermophilus LMD-9

56.085

97.927

0.549
  clpP Streptococcus thermophilus LMG 18311

56.085

97.927

0.549
  clpP Streptococcus pyogenes JRS4

55.208

99.482

0.549
  clpP Streptococcus pyogenes MGAS315

55.208

99.482

0.549
  clpP Streptococcus pneumoniae R6

55.556

97.927

0.544
  clpP Streptococcus pneumoniae Rx1

55.556

97.927

0.544
  clpP Streptococcus pneumoniae D39

55.556

97.927

0.544
  clpP Streptococcus pneumoniae TIGR4

55.556

97.927

0.544
  clpP Streptococcus mutans UA159

54.737

98.446

0.539
  clpP Lactococcus lactis subsp. cremoris KW2

51.562

99.482

0.513
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.042

99.482

0.508