Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   LMD38_RS01185 Genome accession   NZ_CP086328
Coordinates   261736..262317 (-) Length   193 a.a.
NCBI ID   WP_001049162.1    Uniprot ID   A0A9W5QPC2
Organism   Bacillus pacificus strain anQ-h4     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 256736..267317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMD38_RS01160 (LMD38_01160) - 257714..258172 (+) 459 WP_001190080.1 8-oxo-dGTP diphosphatase -
  LMD38_RS01165 (LMD38_01165) rapZ 258193..259074 (+) 882 WP_000138457.1 RNase adapter RapZ -
  LMD38_RS01170 (LMD38_01170) yvcK 259078..260031 (+) 954 WP_000712175.1 YvcK family protein -
  LMD38_RS01175 (LMD38_01175) whiA 260121..261071 (+) 951 WP_000006561.1 DNA-binding protein WhiA -
  LMD38_RS01180 (LMD38_01180) - 261095..261343 (+) 249 WP_000250307.1 HPr family phosphocarrier protein -
  LMD38_RS01185 (LMD38_01185) clpP 261736..262317 (-) 582 WP_001049162.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  LMD38_RS01190 (LMD38_01190) - 262559..263428 (-) 870 WP_000018910.1 DUF421 domain-containing protein -
  LMD38_RS01195 (LMD38_01195) - 263449..263655 (-) 207 WP_000215900.1 DUF1657 domain-containing protein -
  LMD38_RS01200 (LMD38_01200) spoVAE 263665..264015 (-) 351 WP_000575919.1 stage V sporulation protein AE -
  LMD38_RS01205 (LMD38_01205) spoVAD 264012..265028 (-) 1017 WP_073530990.1 stage V sporulation protein AD -
  LMD38_RS01210 (LMD38_01210) spoVAC 265029..265505 (-) 477 WP_000095406.1 stage V sporulation protein AC -
  LMD38_RS01215 (LMD38_01215) - 265535..266023 (-) 489 WP_001226063.1 YhcN/YlaJ family sporulation lipoprotein -
  LMD38_RS01220 (LMD38_01220) - 266117..266323 (-) 207 WP_000216166.1 DUF1657 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21419.67 Da        Isoelectric Point: 5.0423

>NTDB_id=624290 LMD38_RS01185 WP_001049162.1 261736..262317(-) (clpP) [Bacillus pacificus strain anQ-h4]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAEKALEYGLIDKIFTNR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=624290 LMD38_RS01185 WP_001049162.1 261736..262317(-) (clpP) [Bacillus pacificus strain anQ-h4]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAAGA
CCGCATCATTATGCTTGGTAGCGCAATTGATGACAACGTAGCTAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGATCCAGAAAAAGATATTCACATCTACATCAACAGCCCTGGTGGTTCTATCACAGCAGGTATGGCAATTTACGATACA
ATGCAGTTTATTAAACCGCAAGTATCAACAATCTGTATCGGTATGGCTGCATCTATGGGTGCATTCTTACTTGCAGCAGG
TGAAAAAGGAAAACGTTATGCACTTCCAAACAGTGAAGTAATGATTCACCAACCACTTGGTGGAGCACAAGGTCAAGCGA
CTGAAATCGAAATCGCTGCTAAACGTATCCTATTCTTACGTGAAAAACTAAACCAAATTCTTGCTGACCGCACAGGTCAA
CCACTTGAAGTACTACAACGCGACACAGACCGCGACAACTTCATGACAGCAGAAAAAGCTTTAGAATACGGTTTAATCGA
TAAGATCTTTACAAATCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

90.104

99.482

0.896
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.021

97.409

0.653
  clpP Streptococcus thermophilus LMG 18311

60.417

99.482

0.601
  clpP Streptococcus thermophilus LMD-9

60.417

99.482

0.601
  clpP Lactococcus lactis subsp. cremoris KW2

58.854

99.482

0.585
  clpP Streptococcus pneumoniae D39

57.292

99.482

0.57
  clpP Streptococcus pneumoniae Rx1

57.292

99.482

0.57
  clpP Streptococcus pneumoniae R6

57.292

99.482

0.57
  clpP Streptococcus pneumoniae TIGR4

57.292

99.482

0.57
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

56.771

99.482

0.565
  clpP Streptococcus pyogenes JRS4

55.729

99.482

0.554
  clpP Streptococcus pyogenes MGAS315

55.729

99.482

0.554
  clpP Streptococcus mutans UA159

55.44

100

0.554