Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LJY09_RS20340 Genome accession   NZ_CP086208
Coordinates   3926129..3927370 (-) Length   413 a.a.
NCBI ID   WP_028411381.1    Uniprot ID   A0A806TLD8
Organism   Priestia sp. J2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3921129..3932370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJY09_RS20320 spoVS 3921689..3921949 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  LJY09_RS20325 - 3922173..3922970 (-) 798 WP_028411380.1 TIGR00282 family metallophosphoesterase -
  LJY09_RS20330 rny 3923052..3924611 (-) 1560 WP_013058803.1 ribonuclease Y -
  LJY09_RS20335 recA 3924892..3925929 (-) 1038 WP_013058804.1 recombinase RecA Machinery gene
  LJY09_RS20340 cinA 3926129..3927370 (-) 1242 WP_028411381.1 competence/damage-inducible protein A Machinery gene
  LJY09_RS20345 pgsA 3927387..3927971 (-) 585 WP_028411382.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LJY09_RS20350 - 3928116..3929099 (-) 984 WP_223546233.1 helix-turn-helix domain-containing protein -
  LJY09_RS20355 - 3929112..3929903 (-) 792 WP_028411383.1 DUF3388 domain-containing protein -
  LJY09_RS20360 - 3930117..3930377 (-) 261 WP_013058809.1 DUF3243 domain-containing protein -
  LJY09_RS20365 ymfI 3930443..3931168 (-) 726 WP_154973158.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44944.02 Da        Isoelectric Point: 4.9937

>NTDB_id=623725 LJY09_RS20340 WP_028411381.1 3926129..3927370(-) (cinA) [Priestia sp. J2]
MMNAEIIGVGSELLLGQIANTNAQYLSKKLAELGINVYYHTVVGDNAQRLKEVIATAQTRAELIIFTGGLGPTKDDLTKE
TIASVLGVELTTNAEALESIEAYFKQSNRIMTPNNKKQAIVLEGSTVLPNDYGMAPGMGLTVEGKHYMLFPGPPKELYPM
YEAYGQEFLAQKLELKESIESRVLRFFGIGESQLETEIEDLLDAQTNPTIAPLAGDGEVTLRLTAKHADAAEAQRMLDEV
EKTISERVGEYLYGYEATSLHNELVKELTAQGLTIASAESLTGGLFSERLTTVSGAGEVVKGSLVAYHYEIKQNILGVSE
HTLNQYGAVSEQCAAEMAQRIQQLYKTDIGIGFTGVAGPSKQEGHPVGTVHIGVAYKDQTPQVYSLQLSGSRQGIRSRTV
NYGCHYVLKTIKK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=623725 LJY09_RS20340 WP_028411381.1 3926129..3927370(-) (cinA) [Priestia sp. J2]
ATGATGAACGCTGAAATTATTGGAGTCGGCTCTGAGCTGCTGCTTGGGCAAATTGCCAATACAAACGCTCAGTATTTATC
GAAAAAATTAGCCGAACTTGGAATTAATGTTTACTATCATACAGTAGTAGGAGATAATGCACAGCGCTTGAAAGAAGTGA
TTGCTACAGCTCAAACACGTGCAGAGTTAATTATTTTCACAGGCGGGCTTGGTCCTACAAAAGATGATTTAACAAAAGAA
ACAATTGCGAGTGTGCTAGGAGTAGAGTTGACAACAAATGCGGAAGCACTTGAAAGCATTGAAGCCTATTTCAAACAGTC
AAATCGTATCATGACACCTAACAATAAAAAACAGGCAATTGTACTTGAAGGTTCGACAGTGCTCCCTAATGATTACGGAA
TGGCTCCAGGTATGGGGCTTACAGTAGAGGGAAAACACTATATGCTATTCCCAGGGCCGCCAAAAGAGCTCTATCCAATG
TATGAAGCATATGGTCAAGAATTTTTAGCTCAAAAGCTTGAATTAAAAGAAAGTATTGAATCACGCGTTCTTCGTTTTTT
CGGAATAGGAGAATCACAGCTTGAGACGGAAATTGAAGATTTGCTTGATGCGCAAACAAACCCGACGATTGCACCGCTTG
CAGGAGATGGAGAAGTGACGCTTCGCTTAACTGCTAAGCACGCTGATGCTGCTGAAGCACAGCGCATGTTAGACGAAGTG
GAAAAAACCATTTCAGAGCGCGTAGGCGAGTATTTATATGGATACGAAGCAACTTCTTTACATAATGAATTGGTAAAAGA
ATTAACGGCACAAGGCTTGACGATTGCTTCAGCCGAAAGTTTAACCGGCGGGTTATTCAGCGAACGTTTAACAACTGTTT
CAGGTGCTGGAGAAGTTGTTAAAGGCAGCCTGGTAGCCTATCATTATGAAATCAAGCAAAATATTCTCGGAGTGAGCGAA
CACACGCTGAATCAGTACGGAGCCGTTAGCGAGCAGTGCGCGGCTGAAATGGCTCAGCGTATTCAACAGTTATACAAAAC
GGATATTGGCATCGGTTTTACGGGTGTAGCTGGACCCTCTAAACAAGAAGGACACCCTGTAGGAACAGTGCATATAGGGG
TCGCTTATAAGGATCAAACTCCTCAAGTTTACAGTTTGCAGCTATCTGGAAGCCGCCAAGGAATTCGTTCACGAACGGTT
AATTACGGCTGTCATTACGTATTGAAGACGATAAAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A806TLD8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.512

99.274

0.591
  cinA Streptococcus mitis NCTC 12261

47.143

100

0.479
  cinA Streptococcus mitis SK321

46.905

100

0.477
  cinA Streptococcus pneumoniae TIGR4

46.429

100

0.472
  cinA Streptococcus pneumoniae Rx1

45.952

100

0.467
  cinA Streptococcus pneumoniae R6

45.952

100

0.467
  cinA Streptococcus pneumoniae D39

45.714

100

0.465
  cinA Streptococcus mutans UA159

44.686

100

0.448