Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LL045_RS05500 Genome accession   NZ_CP086083
Coordinates   1107393..1107797 (-) Length   134 a.a.
NCBI ID   WP_230315109.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP20A     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1102393..1112797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL045_RS05470 (LL045_05455) - 1102548..1104080 (+) 1533 WP_098393893.1 Nramp family divalent metal transporter -
  LL045_RS05475 (LL045_05460) - 1104182..1105150 (+) 969 WP_003130649.1 PhoH family protein -
  LL045_RS05480 (LL045_05465) - 1105208..1105687 (+) 480 WP_394530545.1 NUDIX hydrolase -
  LL045_RS05485 (LL045_05470) ybeY 1105839..1106327 (+) 489 WP_003130652.1 rRNA maturation RNase YbeY -
  LL045_RS05490 (LL045_05475) - 1106311..1106766 (+) 456 WP_003130653.1 diacylglycerol kinase family protein -
  LL045_RS05495 (LL045_05480) - 1106780..1107358 (+) 579 WP_394530548.1 nucleotidyltransferase family protein -
  LL045_RS05500 (LL045_05485) comFC 1107393..1107797 (-) 405 WP_230315109.1 ComF family protein Machinery gene
  LL045_RS05505 (LL045_05490) comFA 1108040..1109362 (-) 1323 WP_394530549.1 DEAD/DEAH box helicase Machinery gene
  LL045_RS05510 (LL045_05495) - 1109419..1110048 (+) 630 WP_104142149.1 YigZ family protein -
  LL045_RS05515 (LL045_05500) - 1110182..1110679 (+) 498 WP_104142146.1 VanZ family protein -
  LL045_RS05520 (LL045_05505) - 1110727..1111746 (+) 1020 WP_038601219.1 DUF475 domain-containing protein -
  LL045_RS05525 (LL045_05510) - 1111861..1112607 (+) 747 WP_269887539.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15712.20 Da        Isoelectric Point: 9.8798

>NTDB_id=622376 LL045_RS05500 WP_230315109.1 1107393..1107797(-) (comFC) [Lactococcus lactis subsp. lactis strain EIP20A]
MKDYFSLYKFVGDYRLYQIFEPYFKNISPKFSLVPIPISPKRLEERGFNQVTAFLSQENFIELLEKENSVKQSSLNRKER
LESPNPFRLKKGLKVPTKVILIDDIYTTGTTLYHASQILKEAGVHEIRSFSLCR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=622376 LL045_RS05500 WP_230315109.1 1107393..1107797(-) (comFC) [Lactococcus lactis subsp. lactis strain EIP20A]
ATGAAAGATTATTTTAGTCTGTATAAATTTGTGGGAGATTATCGATTATACCAAATTTTCGAGCCTTATTTTAAAAATAT
TTCCCCAAAATTCTCTTTGGTTCCGATTCCTATTTCACCCAAAAGATTAGAGGAACGTGGTTTCAATCAAGTGACTGCTT
TTCTTTCACAAGAGAATTTTATTGAACTTCTTGAAAAAGAGAATTCCGTCAAACAATCTAGCCTTAATCGAAAAGAACGA
TTGGAAAGTCCAAATCCTTTTCGATTAAAAAAAGGGCTAAAAGTCCCTACAAAAGTTATATTAATTGACGATATTTATAC
AACAGGTACCACCTTATATCACGCATCACAAATTCTAAAAGAAGCTGGTGTTCATGAAATAAGGAGCTTTTCTCTCTGCC
GTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(90-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

67.91

100

0.679
  comFC/cflB Streptococcus mitis SK321

46.043

100

0.478
  comFC/cflB Streptococcus mitis NCTC 12261

46.043

100

0.478
  comFC/cflB Streptococcus pneumoniae TIGR4

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae D39

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae Rx1

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae R6

43.885

100

0.455
  comFC Bacillus subtilis subsp. subtilis str. 168

38.776

100

0.425
  comFC Latilactobacillus sakei subsp. sakei 23K

40.157

94.776

0.381