Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   SIR_RS15980 Genome accession   NC_022246
Coordinates   1273366..1273980 (-) Length   204 a.a.
NCBI ID   WP_225791046.1    Uniprot ID   -
Organism   Streptococcus intermedius B196     
Function   degradation of ComX; degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 1268366..1278980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIR_RS15955 (SIR_1220) - 1268789..1269553 (-) 765 WP_003070045.1 ABC transporter ATP-binding protein -
  SIR_RS15960 (SIR_1221) - 1269553..1270503 (-) 951 WP_003070047.1 branched-chain amino acid ABC transporter permease -
  SIR_RS15965 (SIR_1222) - 1270507..1271376 (-) 870 WP_003043257.1 branched-chain amino acid ABC transporter permease -
  SIR_RS15970 (SIR_1223) - 1271760..1272923 (-) 1164 WP_021003005.1 ABC transporter substrate-binding protein -
  SIR_RS15975 (SIR_1224) - 1273006..1273275 (-) 270 WP_003073520.1 DUF2129 domain-containing protein -
  SIR_RS15980 (SIR_1225) clpP 1273366..1273980 (-) 615 WP_225791046.1 ATP-dependent Clp protease proteolytic subunit Regulator
  SIR_RS15985 (SIR_1226) upp 1274069..1274698 (-) 630 WP_021003007.1 uracil phosphoribosyltransferase -
  SIR_RS15990 (SIR_1227) mgtA 1274796..1277450 (-) 2655 WP_021003008.1 magnesium-translocating P-type ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22424.53 Da        Isoelectric Point: 4.6199

>NTDB_id=61887 SIR_RS15980 WP_225791046.1 1273366..1273980(-) (clpP) [Streptococcus intermedius B196]
MSDEKENTMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGAVEDNMANSIIAQLLFLDAQDSTKDIYLYINTPGGSVSAG
LAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEK
ILADNSGKTVKQVHKDAERDYWMSAQETLDYGFIDEIMANNNLN

Nucleotide


Download         Length: 615 bp        

>NTDB_id=61887 SIR_RS15980 WP_225791046.1 1273366..1273980(-) (clpP) [Streptococcus intermedius B196]
ATATCAGATGAAAAGGAGAATACAATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGGGAACGCTCGTACGATATTTA
CTCACGTCTTTTAAAAGATCGCATTATTATGCTAACTGGAGCAGTTGAAGACAACATGGCCAATTCTATTATTGCCCAAC
TGCTTTTCCTAGATGCCCAAGATAGTACAAAGGATATTTATCTTTATATCAATACGCCAGGAGGTTCTGTATCGGCGGGT
CTAGCGATTGTCGATACAATGAACTTCATCAAATCAGATGTTCAAACAATTGTCATGGGAATGGCTGCGTCCATGGGAAC
AATCATCGCTTCAAGTGGTGCTAAAGGCAAACGCTTTATGTTGCCAAATGCAGAGTACATGATTCACCAACCAATGGGTG
GAACAGGTGGCGGTACGCAACAAACCGATATGGCGATTGCTGCTGAACATTTGCTGAAAACTCGAAACAATTTGGAAAAA
ATTCTTGCAGATAACTCTGGTAAGACCGTTAAGCAAGTTCATAAAGATGCTGAACGTGACTACTGGATGAGTGCTCAAGA
AACACTAGATTATGGTTTCATTGATGAAATCATGGCAAATAACAATTTGAACTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(19-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pneumoniae Rx1

91.837

96.078

0.882
  clpP Streptococcus pneumoniae D39

91.837

96.078

0.882
  clpP Streptococcus pneumoniae R6

91.837

96.078

0.882
  clpP Streptococcus pneumoniae TIGR4

91.837

96.078

0.882
  clpP Streptococcus thermophilus LMD-9

91.795

95.588

0.877
  clpP Streptococcus thermophilus LMG 18311

91.795

95.588

0.877
  clpP Streptococcus mutans UA159

88.177

99.51

0.877
  clpP Streptococcus pyogenes MGAS315

91.282

95.588

0.873
  clpP Streptococcus pyogenes JRS4

91.282

95.588

0.873
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

85.128

95.588

0.814
  clpP Lactococcus lactis subsp. cremoris KW2

84.615

95.588

0.809
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.549

94.608

0.554
  clpP Bacillus subtilis subsp. subtilis str. 168

57.812

94.118

0.544

Multiple sequence alignment