Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   LIS80_RS25425 Genome accession   NZ_CP085413
Coordinates   4896039..4896620 (+) Length   193 a.a.
NCBI ID   WP_001049162.1    Uniprot ID   A0A9W5QPC2
Organism   Bacillus paranthracis strain KF11     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4891039..4901620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS80_RS25380 (LIS80_25415) - 4891228..4891461 (-) 234 WP_000033704.1 mersacidin/lichenicidin family type 2 lantibiotic -
  LIS80_RS25390 (LIS80_25425) - 4892036..4892242 (+) 207 WP_000216166.1 DUF1657 domain-containing protein -
  LIS80_RS25395 (LIS80_25430) - 4892336..4892821 (+) 486 WP_001170598.1 YhcN/YlaJ family sporulation lipoprotein -
  LIS80_RS25400 (LIS80_25435) spoVAC 4892851..4893327 (+) 477 WP_000095407.1 stage V sporulation protein AC -
  LIS80_RS25405 (LIS80_25440) spoVAD 4893328..4894344 (+) 1017 WP_000938956.1 stage V sporulation protein AD -
  LIS80_RS25410 (LIS80_25445) spoVAE 4894341..4894691 (+) 351 WP_000575919.1 stage V sporulation protein AE -
  LIS80_RS25415 (LIS80_25450) - 4894701..4894907 (+) 207 WP_000215890.1 DUF1657 domain-containing protein -
  LIS80_RS25420 (LIS80_25455) - 4894928..4895797 (+) 870 WP_000018916.1 YetF domain-containing protein -
  LIS80_RS25425 (LIS80_25460) clpP 4896039..4896620 (+) 582 WP_001049162.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  LIS80_RS25430 (LIS80_25465) - 4896935..4897183 (-) 249 WP_000250307.1 HPr family phosphocarrier protein -
  LIS80_RS25435 (LIS80_25470) whiA 4897207..4898157 (-) 951 WP_000006561.1 DNA-binding protein WhiA -
  LIS80_RS25440 (LIS80_25475) - 4898247..4899200 (-) 954 WP_000712178.1 YvcK family protein -
  LIS80_RS25445 (LIS80_25480) rapZ 4899204..4900085 (-) 882 WP_000138457.1 RNase adapter RapZ -
  LIS80_RS25450 (LIS80_25485) - 4900106..4900564 (-) 459 WP_001190080.1 8-oxo-dGTP diphosphatase -
  LIS80_RS25455 (LIS80_25490) - 4900793..4901599 (-) 807 WP_000455203.1 DUF368 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21419.67 Da        Isoelectric Point: 5.0423

>NTDB_id=617938 LIS80_RS25425 WP_001049162.1 4896039..4896620(+) (clpP) [Bacillus paranthracis strain KF11]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAEKALEYGLIDKIFTNR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=617938 LIS80_RS25425 WP_001049162.1 4896039..4896620(+) (clpP) [Bacillus paranthracis strain KF11]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAAGA
CCGCATCATTATGCTTGGTAGCGCAATTGATGACAACGTAGCTAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGATCCAGAAAAAGATATTCACATCTACATCAACAGCCCTGGTGGTTCTATCACAGCAGGTATGGCAATTTACGATACA
ATGCAGTTTATTAAACCGCAAGTATCAACAATCTGTATCGGTATGGCTGCATCTATGGGTGCATTCTTACTCGCAGCAGG
TGAAAAAGGAAAACGTTATGCACTTCCAAACAGTGAAGTAATGATTCACCAACCACTTGGTGGTGCACAAGGTCAAGCGA
CTGAAATCGAAATCGCTGCTAAACGTATCCTATTCTTACGTGAAAAACTAAACCAAATTCTTGCTGACCGCACAGGTCAA
CCACTTGAAGTGCTACAACGCGACACAGACCGCGACAACTTCATGACAGCAGAAAAAGCTTTAGAATACGGTTTAATCGA
TAAGATCTTTACAAATCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

90.104

99.482

0.896
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.021

97.409

0.653
  clpP Streptococcus thermophilus LMG 18311

60.417

99.482

0.601
  clpP Streptococcus thermophilus LMD-9

60.417

99.482

0.601
  clpP Lactococcus lactis subsp. cremoris KW2

58.854

99.482

0.585
  clpP Streptococcus pneumoniae D39

57.292

99.482

0.57
  clpP Streptococcus pneumoniae Rx1

57.292

99.482

0.57
  clpP Streptococcus pneumoniae R6

57.292

99.482

0.57
  clpP Streptococcus pneumoniae TIGR4

57.292

99.482

0.57
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

56.771

99.482

0.565
  clpP Streptococcus pyogenes JRS4

55.729

99.482

0.554
  clpP Streptococcus pyogenes MGAS315

55.729

99.482

0.554
  clpP Streptococcus mutans UA159

55.44

100

0.554