Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   LIS80_RS13535 Genome accession   NZ_CP085413
Coordinates   2623364..2623945 (-) Length   193 a.a.
NCBI ID   WP_000991618.1    Uniprot ID   -
Organism   Bacillus paranthracis strain KF11     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2618364..2628945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS80_RS13505 (LIS80_13515) - 2618381..2619217 (-) 837 WP_001027908.1 protein phosphatase 2C domain-containing protein -
  LIS80_RS13510 (LIS80_13520) - 2619201..2619686 (-) 486 WP_029141132.1 HIT family protein -
  LIS80_RS13515 (LIS80_13525) - 2619789..2619959 (-) 171 WP_001992228.1 hypothetical protein -
  LIS80_RS13520 (LIS80_13530) - 2620256..2621092 (-) 837 WP_001084762.1 proline/glycine betaine ABC transporter permease -
  LIS80_RS13525 (LIS80_13535) - 2621085..2622290 (-) 1206 WP_000370623.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  LIS80_RS13530 (LIS80_13540) - 2622462..2623319 (+) 858 WP_001227648.1 glycine betaine ABC transporter substrate-binding protein -
  LIS80_RS13535 (LIS80_13545) clpP 2623364..2623945 (-) 582 WP_000991618.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  LIS80_RS13540 (LIS80_13550) - 2623967..2624653 (-) 687 WP_000337484.1 RNA polymerase subunit sigma-70 -
  LIS80_RS13545 (LIS80_13555) - 2624797..2625117 (+) 321 WP_001125397.1 2Fe-2S iron-sulfur cluster-binding protein -
  LIS80_RS13550 (LIS80_13560) rpiA 2625122..2625784 (+) 663 WP_001050000.1 ribose 5-phosphate isomerase A -
  LIS80_RS13555 (LIS80_13565) - 2625890..2626324 (+) 435 WP_000555726.1 GNAT family N-acetyltransferase -
  LIS80_RS13560 (LIS80_13570) - 2626573..2627766 (-) 1194 WP_000124907.1 macrolide family glycosyltransferase -
  LIS80_RS13565 (LIS80_13575) - 2627822..2628499 (-) 678 WP_000373593.1 SUMF1/EgtB/PvdO family nonheme iron enzyme -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21208.52 Da        Isoelectric Point: 5.0972

>NTDB_id=617920 LIS80_RS13535 WP_000991618.1 2623364..2623945(-) (clpP) [Bacillus paranthracis strain KF11]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIRPDVQTLCMGLAASFGALLLLAGAKGKRFALPNSEIMIHQPLGGVKGQATEIEITAKRILKLKHDINKIIADRTGQ
PIEKIAHDTERDYFMTAEEAKEYGIVDGVVEKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=617920 LIS80_RS13535 WP_000991618.1 2623364..2623945(-) (clpP) [Bacillus paranthracis strain KF11]
ATGAATGCAATTCCATATGTAGTAGAACAAACAAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTGAAAGA
CCGCATTATTATAATCGGTTCAGAGATTAATGATCAGGTTGCGAGCAGTGTAGTAGCGCAATTATTATTTTTAGAAGCGG
AAGATGCGGAGAAAGATATATTTCTGTATATTAATAGTCCTGGCGGCTCAACGACAGCAGGATTTGCAATATTAGATACA
ATGAATCTTATTAGACCGGATGTGCAAACGCTTTGTATGGGCTTAGCTGCATCATTTGGTGCCCTTTTACTATTAGCTGG
TGCAAAAGGAAAAAGATTCGCGCTTCCTAATAGTGAAATCATGATTCATCAGCCACTTGGCGGTGTAAAAGGGCAAGCAA
CAGAAATCGAAATTACAGCAAAAAGAATATTGAAATTGAAGCATGACATTAATAAGATTATTGCTGATAGAACAGGACAG
CCAATCGAAAAAATAGCACATGATACGGAAAGAGATTATTTTATGACAGCAGAGGAAGCTAAAGAATATGGGATTGTTGA
TGGGGTCGTTGAGAAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.421

98.446

0.674
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.783

97.927

0.674
  clpP Streptococcus thermophilus LMD-9

56.085

97.927

0.549
  clpP Streptococcus thermophilus LMG 18311

56.085

97.927

0.549
  clpP Streptococcus pyogenes JRS4

55.208

99.482

0.549
  clpP Streptococcus pyogenes MGAS315

55.208

99.482

0.549
  clpP Streptococcus pneumoniae R6

55.556

97.927

0.544
  clpP Streptococcus pneumoniae Rx1

55.556

97.927

0.544
  clpP Streptococcus pneumoniae D39

55.556

97.927

0.544
  clpP Streptococcus pneumoniae TIGR4

55.556

97.927

0.544
  clpP Streptococcus mutans UA159

54.737

98.446

0.539
  clpP Lactococcus lactis subsp. cremoris KW2

51.562

99.482

0.513
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.042

99.482

0.508