Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   LIS83_RS13840 Genome accession   NZ_CP085402
Coordinates   2707016..2707597 (-) Length   193 a.a.
NCBI ID   WP_000991624.1    Uniprot ID   -
Organism   Bacillus anthracis strain CMF9     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2702016..2712597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS83_RS13810 (LIS83_13830) - 2702065..2702889 (-) 825 WP_052494321.1 PP2C family serine/threonine-protein phosphatase -
  LIS83_RS13815 (LIS83_13835) - 2702873..2703375 (-) 503 Protein_2661 HIT family protein -
  LIS83_RS13820 (LIS83_13840) - 2703450..2703620 (-) 171 WP_001992228.1 hypothetical protein -
  LIS83_RS13825 (LIS83_13845) - 2703907..2704743 (-) 837 WP_001084766.1 proline/glycine betaine ABC transporter permease -
  LIS83_RS13830 (LIS83_13850) - 2704736..2705941 (-) 1206 WP_042512624.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  LIS83_RS13835 (LIS83_13855) - 2706113..2706970 (+) 858 WP_042512623.1 glycine betaine ABC transporter substrate-binding protein -
  LIS83_RS13840 (LIS83_13860) clpP 2707016..2707597 (-) 582 WP_000991624.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  LIS83_RS13845 (LIS83_13865) - 2707619..2708305 (-) 687 WP_000337493.1 RNA polymerase subunit sigma-70 -
  LIS83_RS13850 (LIS83_13870) - 2708448..2708768 (+) 321 WP_001125378.1 2Fe-2S iron-sulfur cluster-binding protein -
  LIS83_RS13855 (LIS83_13875) rpiA 2708773..2709435 (+) 663 WP_042511163.1 ribose 5-phosphate isomerase A -
  LIS83_RS13860 (LIS83_13880) - 2709543..2709977 (+) 435 WP_042512622.1 GNAT family N-acetyltransferase -
  LIS83_RS13865 (LIS83_13885) - 2710108..2711475 (-) 1368 WP_042512621.1 lytic polysaccharide monooxygenase -
  LIS83_RS13870 (LIS83_13890) - 2711913..2712431 (-) 519 WP_000720567.1 DNA topology modulation protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21250.48 Da        Isoelectric Point: 4.9174

>NTDB_id=617772 LIS83_RS13840 WP_000991624.1 2707016..2707597(-) (clpP) [Bacillus anthracis strain CMF9]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTEQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=617772 LIS83_RS13840 WP_000991624.1 2707016..2707597(-) (clpP) [Bacillus anthracis strain CMF9]
ATGAATGCAATTCCATATGTTGTAGAACAAACGAAATTAGGAGAGCGTTCCTATGATATATATTCAAGGTTATTAAAAGA
CCGTATTGTTATTATCGGTTCAGAAATAAATGATCAAGTAGCGAGTAGTGTCGTAGCTCAATTATTATTTTTAGAAGCAG
AAGATGCAGAGAAAGATATATTTTTATACATTAATAGCCCAGGCGGATCAACGACAGCAGGTTTTGCCATATTAGATACG
ATGAATTTAATTAAACCAGACGTGCAGACACTATGCATGGGATTTGCAGCATCATTTGGTGCATTGTTATTATTATCAGG
TGCAAAAGGAAAACGATTTGCACTCCCAAATAGTGAAATTATGATTCATCAGCCACTTGGTGGTGCGCAAGGGCAAGCGA
CGGAAATCGAAATCACAGCAAAAAGAATTTTAAAGTTAAAACATGATATTAATAAAATGATTGCAGAAAAAACAGAGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGCATATGGGATTGTAGA
TGATGTTGTTACGAAAAAATAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.539

98.964

0.668
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

97.927

0.653
  clpP Streptococcus thermophilus LMD-9

54.167

99.482

0.539
  clpP Streptococcus pneumoniae Rx1

54.167

99.482

0.539
  clpP Streptococcus thermophilus LMG 18311

54.167

99.482

0.539
  clpP Streptococcus pneumoniae D39

54.167

99.482

0.539
  clpP Streptococcus pneumoniae R6

54.167

99.482

0.539
  clpP Streptococcus pneumoniae TIGR4

54.167

99.482

0.539
  clpP Streptococcus pyogenes MGAS315

55.026

97.927

0.539
  clpP Streptococcus pyogenes JRS4

55.026

97.927

0.539
  clpP Streptococcus mutans UA159

52.91

97.927

0.518
  clpP Lactococcus lactis subsp. cremoris KW2

51.852

97.927

0.508
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

49.735

97.927

0.487