NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	LIT38_RS23745	Genome accession	NZ_CP085394
Coordinates	4706901..4707506 (+)	Length	201 a.a.
NCBI ID	WP_009331821.1	Uniprot ID	A0A160MGI8
Organism	Bacillus sp. CMF12
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4701901..4712506

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LIT38_RS23720 (LIT38_23755)	gap	4702357..4703364 (-)	1008	WP_243505881.1	type I glyceraldehyde-3-phosphate dehydrogenase	-
LIT38_RS23725 (LIT38_23760)	-	4703410..4704432 (-)	1023	WP_243505882.1	sugar-binding transcriptional regulator	-
LIT38_RS23730 (LIT38_23765)	-	4704568..4704816 (-)	249	WP_243505883.1	glutaredoxin family protein	-
LIT38_RS23735 (LIT38_23770)	rpoN	4704834..4706165 (-)	1332	WP_243509656.1	RNA polymerase factor sigma-54	-
LIT38_RS23745 (LIT38_23780)	clpP	4706901..4707506 (+)	606	WP_009331821.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
LIT38_RS23750 (LIT38_23785)	-	4707550..4707807 (-)	258	WP_243505884.1	HPr family phosphocarrier protein	-
LIT38_RS23755 (LIT38_23790)	whiA	4707837..4708787 (-)	951	WP_221879529.1	DNA-binding protein WhiA	-
LIT38_RS23760 (LIT38_23795)	-	4708906..4709883 (-)	978	WP_243505885.1	YvcK family protein	-
LIT38_RS23765 (LIT38_23800)	rapZ	4709880..4710773 (-)	894	WP_221879531.1	RNase adapter RapZ	-
LIT38_RS23770 (LIT38_23805)	-	4710802..4711260 (-)	459	WP_113883709.1	8-oxo-dGTP diphosphatase	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 22232.63 Da Isoelectric Point: 4.9255

                                >NTDB_id=617530 LIT38_RS23745 WP_009331821.1 4706901..4707506(+) (clpP) [Bacillus sp. CMF12]

MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVAQLLFLEAENPEKDISIYINSPGGSITAGMAIYDT

MQFIKPKVQTICIGMAASMGAFLLAAGEKGKRFALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNTILSERTGQ

PLEVIARDTDRDNFMTAERALEYGLVDQIITRNSLDEKKDK

Nucleotide

Download Length: 606 bp

                                >NTDB_id=617530 LIT38_RS23745 WP_009331821.1 4706901..4707506(+) (clpP) [Bacillus sp. CMF12]

ATGAACTTAATCCCTACAGTCATTGAACAAACAAACCGCGGTGAGCGCGCTTATGATATTTACTCCCGCCTTTTAAAAGA

CCGCATCATTATGCTGGGAAGCGCAATCGATGACAATGTGGCAAACTCAATTGTTGCCCAGCTTTTATTCCTTGAAGCAG

AAAATCCTGAAAAAGACATTTCCATTTACATTAATAGCCCGGGCGGAAGCATTACGGCTGGTATGGCTATTTATGATACG

ATGCAATTCATTAAGCCGAAGGTACAAACCATTTGTATCGGTATGGCAGCATCCATGGGTGCATTCCTTCTTGCTGCTGG

AGAGAAAGGCAAGCGTTTTGCCCTTCCAAACAGTGAAGTCATGATTCATCAGCCGCTGGGCGGAGCTCAGGGACAGGCGA

CTGAAATCGAAATCGCTGCAAAGCGCATTCTTTTCCTTCGCGAAAAATTAAACACAATTCTTTCAGAGCGCACTGGACAG

CCGCTTGAAGTCATTGCGAGGGACACTGACCGCGATAACTTTATGACAGCTGAAAGAGCTCTTGAATACGGTTTGGTTGA

CCAAATCATTACTAGAAACTCTTTAGATGAGAAGAAAGATAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A160MGI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	89.583	95.522	0.856
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	67.016	95.025	0.637
clpP	Streptococcus thermophilus LMG 18311	58.974	97.015	0.572
clpP	Streptococcus thermophilus LMD-9	58.974	97.015	0.572
clpP	Lactococcus lactis subsp. cremoris KW2	58.462	97.015	0.567
clpP	Streptococcus pneumoniae D39	57.653	97.512	0.562
clpP	Streptococcus pneumoniae Rx1	57.653	97.512	0.562
clpP	Streptococcus pneumoniae R6	57.653	97.512	0.562
clpP	Streptococcus pneumoniae TIGR4	57.653	97.512	0.562
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	56.41	97.015	0.547
clpP	Streptococcus mutans UA159	56.122	97.512	0.547
clpP	Streptococcus pyogenes JRS4	55.897	97.015	0.542
clpP	Streptococcus pyogenes MGAS315	55.897	97.015	0.542

Detailed information NTG0617530