Detailed information NTG0617514

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: LIT38_RS16880
• Genome accession: NZ_CP085394
• Coordinates: 3382815..3383396 (-)
• Length: 193 a.a.
• NCBI ID: WP_275720303.1
• Uniprot ID: -
• Organism: Bacillus sp. CMF12
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3377815..3388396

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LIT38_RS16860 (LIT38_16880)	-	3378200..3378505 (+)	306	WP_019382679.1	helix-turn-helix domain-containing protein	-
LIT38_RS16865 (LIT38_16885)	-	3379222..3380091 (-)	870	WP_252215373.1	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	-
LIT38_RS16870 (LIT38_16890)	brnQ	3380463..3381815 (-)	1353	WP_243503902.1	branched-chain amino acid transport system II carrier protein	-
LIT38_RS16875 (LIT38_16895)	-	3382111..3382770 (+)	660	WP_252215375.1	GntR family transcriptional regulator	-
LIT38_RS16880 (LIT38_16900)	clpP	3382815..3383396 (-)	582	WP_275720303.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
LIT38_RS16885 (LIT38_16905)	-	3383423..3384097 (-)	675	WP_252215377.1	sigma-70 family RNA polymerase sigma factor	-
LIT38_RS16890 (LIT38_16910)	-	3384282..3385481 (-)	1200	WP_243503904.1	phosphoglycerate dehydrogenase	-
LIT38_RS16895 (LIT38_16915)	-	3385833..3386045 (+)	213	WP_243503905.1	hypothetical protein	-
LIT38_RS16900 (LIT38_16920)	-	3386052..3387155 (-)	1104	WP_243503907.1	GerAB/ArcD/ProY family transporter	-
LIT38_RS16905 (LIT38_16925)	-	3387175..3388344 (-)	1170	WP_243503910.1	Ger(x)C family spore germination protein	-

Sequence

Protein

• Length: 193 a.a.
• Molecular weight: 21339.50 Da
• Isoelectric Point: 5.3747

>NTDB_id=617514 LIT38_RS16880 WP_275720303.1 3382815..3383396(-) (clpP) [Bacillus sp. CMF12]
MTAIPYVIEQSSKGERSYDIYSRLLKDRIIMIGEEINDVVANSVIAQLLFLAAESPEKDISLYINSPGGSTTAGFAIYDT
IQYIKPDVRTICTGMAASFGAMLLLAGKKGKRYSLPNSEIMIHQPLGGARGQATEIEISAKRILKLREHINGIIAERTGQ
PAEKVARDTDRDYFMTAEEAKEYGIIDEIIYKS

Nucleotide

• Length: 582 bp

>NTDB_id=617514 LIT38_RS16880 WP_275720303.1 3382815..3383396(-) (clpP) [Bacillus sp. CMF12]
GTGACAGCAATACCATATGTTATTGAGCAGTCAAGCAAGGGAGAACGTTCATATGATATTTACTCACGGCTGTTAAAAGA
CAGGATTATCATGATAGGAGAAGAAATAAATGATGTGGTTGCCAATAGTGTGATTGCCCAGCTGCTTTTTCTTGCAGCAG
AATCTCCTGAAAAAGATATCTCCCTTTATATTAATAGTCCGGGCGGTTCGACAACCGCAGGATTTGCCATCTACGATACG
ATTCAATATATAAAGCCTGATGTGAGAACAATTTGCACAGGAATGGCCGCGTCATTTGGTGCGATGCTCCTTCTGGCAGG
GAAAAAAGGGAAACGCTACAGTCTGCCGAACAGTGAAATCATGATTCATCAGCCTCTGGGCGGTGCTCGCGGCCAGGCAA
CCGAAATCGAAATTTCGGCGAAGCGGATCTTAAAACTGAGGGAGCATATTAATGGAATTATTGCAGAAAGAACTGGCCAG
CCTGCAGAAAAAGTGGCGCGGGACACGGACCGCGATTATTTCATGACTGCCGAAGAAGCAAAGGAATACGGGATTATCGA
TGAAATTATCTATAAAAGCTAG

Domains

Predicted by InterproScan.

• Clp protease (CLP_protease) (13-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	73.684	98.446	0.725
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	68.421	98.446	0.674
clpP	Streptococcus thermophilus LMD-9	57.672	97.927	0.565
clpP	Streptococcus pneumoniae Rx1	57.672	97.927	0.565
clpP	Streptococcus pneumoniae D39	57.672	97.927	0.565
clpP	Streptococcus thermophilus LMG 18311	57.672	97.927	0.565
clpP	Streptococcus pneumoniae R6	57.672	97.927	0.565
clpP	Streptococcus pneumoniae TIGR4	57.672	97.927	0.565
clpP	Streptococcus pyogenes JRS4	55.556	97.927	0.544
clpP	Streptococcus pyogenes MGAS315	55.556	97.927	0.544
clpP	Lactococcus lactis subsp. cremoris KW2	55.026	97.927	0.539
clpP	Streptococcus mutans UA159	52.88	98.964	0.523
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	53.439	97.927	0.523