Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LG308_RS02305 Genome accession   NZ_CP085257
Coordinates   486716..488821 (+) Length   701 a.a.
NCBI ID   WP_404441747.1    Uniprot ID   -
Organism   Stutzerimonas chloritidismutans strain ABH-495     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 481716..493821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG308_RS02285 (LG308_02285) comM 483884..484948 (+) 1065 WP_392568499.1 pilus assembly protein PilM Machinery gene
  LG308_RS02290 (LG308_02290) pilN 484948..485520 (+) 573 WP_404439610.1 type 4a pilus biogenesis protein PilN -
  LG308_RS02295 (LG308_02295) pilO 485517..486140 (+) 624 WP_404439612.1 type 4a pilus biogenesis protein PilO -
  LG308_RS02300 (LG308_02300) pilP 486137..486664 (+) 528 WP_404439614.1 type 4a pilus biogenesis lipoprotein PilP -
  LG308_RS02305 (LG308_02305) pilQ 486716..488821 (+) 2106 WP_404441747.1 type IV pilus secretin PilQ Machinery gene
  LG308_RS02310 (LG308_02310) aroK 488829..489374 (+) 546 WP_404439616.1 shikimate kinase AroK -
  LG308_RS02315 (LG308_02315) aroB 489398..490501 (+) 1104 WP_404439618.1 3-dehydroquinate synthase -
  LG308_RS02320 (LG308_02320) - 490511..492016 (+) 1506 WP_404439620.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 75463.49 Da        Isoelectric Point: 4.8116

>NTDB_id=616646 LG308_RS02305 WP_404441747.1 486716..488821(+) (pilQ) [Stutzerimonas chloritidismutans strain ABH-495]
MNTSLSRLGLSLLAVLISPALLAANLNSLDVASLPGDRVELKLAFDEPVPTPRGYTLDQPARIALDLPGVSSNLASKNRE
LGVGNARSVTVVEAQGRTRLIVNLTSLVPYSTRVDGNNLFVVLGESSASPAAVSAAPLAPIARTAPVAAMAASKSITNID
FRRGEGGAGDVVITLSDPTISPSIEEQGGKIRVSFAKTQLPESLRVRLDVQDFATPVKFVDSSSKAEGTSIAIEPTGRYD
YLAYQTDDKLTISVKPLSEADAEKRKAEHFTYSGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITLRLQNVPW
DQALELVLKTKGLDKRQVGNVLLVAPADEIAARERQELESQRQIAELAPLRREVVQVNYAKASDIARLFQSVTDQGGASE
DRGSIAVDDRTNNIIAYQTQERLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGNLWAGDKWNAWGKGGNL
GVEDGDEGQVGRFPGIRETPLNLPFVDMGAIGATSGIGLGFVTNNAILDLQLSAMEKTGNGEVVSQPKVVTADKETAKIL
KGSEVPYQEASSSGATSTSFKEAALSLEVTPQITPDNRIIMEVKVTKDEPDFSQAASTGGIPAIRKNEVNAKVLVTDGET
IVIGGVFSNTQSKSVDKVPFLGDLPFVGRVFRRDLVQDRKSELLVFITPRIMNNQAIQASR

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=616646 LG308_RS02305 WP_404441747.1 486716..488821(+) (pilQ) [Stutzerimonas chloritidismutans strain ABH-495]
ATGAATACCTCTCTATCACGCCTTGGTTTGTCATTGCTGGCAGTGCTTATTTCGCCCGCGCTATTGGCTGCAAATCTGAA
TTCACTCGACGTGGCGTCGCTACCCGGCGACCGTGTTGAGCTAAAGTTGGCTTTCGATGAGCCCGTGCCGACGCCGCGCG
GCTACACACTTGACCAGCCGGCGCGCATCGCGCTGGATTTGCCGGGTGTTTCCAGCAATCTCGCATCCAAGAACCGCGAG
CTGGGAGTCGGCAATGCCCGTAGCGTGACGGTCGTTGAGGCTCAAGGAAGAACTCGCCTCATCGTAAACCTGACGTCGCT
CGTTCCGTACTCGACCCGTGTGGACGGAAACAACCTATTCGTCGTGCTAGGCGAGAGCAGTGCTTCACCGGCTGCTGTAT
CCGCCGCTCCGCTTGCGCCGATTGCCAGGACTGCTCCAGTCGCTGCGATGGCAGCGAGCAAGTCGATTACCAATATCGAC
TTTCGTCGCGGAGAGGGTGGTGCAGGCGACGTGGTCATTACGCTTTCGGACCCAACGATCAGTCCCAGCATCGAGGAGCA
GGGTGGCAAGATACGTGTCTCCTTCGCTAAGACACAACTGCCAGAGTCGCTACGCGTACGGTTGGATGTGCAGGATTTCG
CCACACCGGTCAAGTTCGTTGACTCAAGCAGTAAGGCTGAAGGGACGAGTATTGCTATCGAGCCGACGGGACGATACGAC
TATCTCGCCTACCAGACCGATGACAAGCTAACAATCAGCGTTAAGCCGCTTAGCGAAGCGGATGCCGAAAAGCGCAAGGC
TGAACACTTCACCTATTCCGGAGAGAAGCTGTCGCTGAACTTTCAGGATATCGATGTGCGGTCTGTGCTGCAGCTGATTG
CAGACTTTACTGACCTTAACTTGGTGGCGAGCGATACCGTCCAGGGCAATATTACATTGCGTCTGCAGAACGTACCTTGG
GATCAGGCGCTAGAGCTGGTATTGAAGACCAAGGGCCTCGATAAGCGCCAGGTTGGCAATGTGTTGCTGGTCGCGCCGGC
AGATGAGATCGCCGCACGTGAGCGTCAAGAACTGGAGTCGCAGCGGCAGATTGCTGAGCTGGCGCCCCTGCGTCGCGAGG
TCGTGCAGGTTAACTATGCGAAAGCTTCCGATATTGCTCGGCTGTTCCAGTCCGTGACGGACCAGGGCGGTGCGAGTGAG
GATCGTGGGTCTATCGCTGTGGATGACCGCACGAATAATATCATCGCGTACCAGACCCAGGAGCGTCTTGACGAGCTTCG
ACGGATCGTTGCTCAGCTGGACATCCCGGTGCGCCAAGTGATGATCGAAGCGCGTATTGTCGAGGCCAACGTCGATTACG
ATAAGAGCTTAGGTGTTCGCTGGGGTGGAAACCTCTGGGCCGGTGACAAGTGGAACGCTTGGGGTAAGGGTGGCAATCTG
GGCGTAGAGGACGGCGACGAGGGTCAGGTTGGTCGTTTCCCTGGCATCCGTGAGACACCGCTCAACCTACCTTTCGTGGA
CATGGGGGCGATCGGTGCAACCTCTGGCATAGGCTTAGGCTTTGTAACAAACAACGCCATTCTCGACCTGCAGCTCTCCG
CGATGGAGAAGACAGGCAATGGAGAGGTTGTTTCCCAGCCTAAGGTTGTCACTGCGGATAAGGAAACCGCCAAGATCCTG
AAAGGTTCTGAGGTGCCGTATCAAGAGGCGAGCTCCAGCGGCGCAACCAGTACATCTTTCAAGGAGGCGGCACTTTCTCT
GGAGGTAACCCCACAGATTACTCCTGACAACCGAATCATCATGGAAGTGAAAGTCACCAAGGATGAACCTGACTTCTCGC
AGGCGGCTAGTACTGGCGGTATCCCCGCCATCCGCAAGAACGAAGTCAATGCGAAGGTATTGGTTACCGATGGTGAGACG
ATCGTGATCGGCGGCGTGTTCTCCAATACGCAGAGCAAGTCTGTCGACAAGGTTCCGTTCCTAGGCGATCTGCCGTTCGT
GGGTCGGGTGTTCCGTCGCGACTTGGTGCAGGATCGAAAGTCTGAACTGCTGGTGTTCATCACTCCACGGATCATGAATA
ATCAGGCGATCCAAGCCAGTCGTTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(300-346)

Bacterial type II and III secretion system protein (Secretin)

(534-692)

Bacterial type II/III secretion system short domain (Secretin_N)

(373-439)

AMIN domain (AMIN)

(38-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

72.664

100

0.743
  pilQ Acinetobacter baumannii strain A118

39.513

100

0.417
  pilQ Acinetobacter baumannii D1279779

39.513

100

0.417
  comQ Acinetobacter baylyi ADP1

40.709

100

0.409
  pilQ Legionella pneumophila strain ERS1305867

37.83

97.29

0.368
  pilQ Legionella pneumophila strain Lp02

37.683

97.29

0.367