Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LG308_RS02285 Genome accession   NZ_CP085257
Coordinates   483884..484948 (+) Length   354 a.a.
NCBI ID   WP_392568499.1    Uniprot ID   -
Organism   Stutzerimonas chloritidismutans strain ABH-495     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 478884..489948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG308_RS02275 (LG308_02275) - 479773..481041 (+) 1269 WP_404439606.1 malic enzyme-like NAD(P)-binding protein -
  LG308_RS02280 (LG308_02280) - 481255..483699 (-) 2445 WP_404439608.1 penicillin-binding protein 1A -
  LG308_RS02285 (LG308_02285) comM 483884..484948 (+) 1065 WP_392568499.1 pilus assembly protein PilM Machinery gene
  LG308_RS02290 (LG308_02290) pilN 484948..485520 (+) 573 WP_404439610.1 type 4a pilus biogenesis protein PilN -
  LG308_RS02295 (LG308_02295) pilO 485517..486140 (+) 624 WP_404439612.1 type 4a pilus biogenesis protein PilO -
  LG308_RS02300 (LG308_02300) pilP 486137..486664 (+) 528 WP_404439614.1 type 4a pilus biogenesis lipoprotein PilP -
  LG308_RS02305 (LG308_02305) pilQ 486716..488821 (+) 2106 WP_404441747.1 type IV pilus secretin PilQ Machinery gene
  LG308_RS02310 (LG308_02310) aroK 488829..489374 (+) 546 WP_404439616.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37917.31 Da        Isoelectric Point: 4.6397

>NTDB_id=616645 LG308_RS02285 WP_392568499.1 483884..484948(+) (comM) [Stutzerimonas chloritidismutans strain ABH-495]
MLGLFTKKANTLLGIDISSTSVKLLELSRSGSRYRVESYAVEPLPPNAVVEKNIAELEGVGQALSRLLAKAKTGVKSAAV
AVSGSAVITKSIEMESGLTDDELENQLKIEADQYIPYPLEEVAIDFEVQGSAVRSPGRVEVLLAACRKENVEIREAALAL
AGLTAKVVDVEAYALERSYGLLAPQLGAGHEELTVALVDIGATMTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSM
EEAGLAKKQGGLPDDYDSEVLQPFKEAVVQQVSRSLQFFFAAGQFHDVDYILLAGGTASIQGLDRLIQQKIGTQTLVANP
FADMALSNKVNAGALASDAPSLMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=616645 LG308_RS02285 WP_392568499.1 483884..484948(+) (comM) [Stutzerimonas chloritidismutans strain ABH-495]
GTGCTAGGGCTCTTCACTAAGAAAGCGAACACGCTGCTTGGGATCGACATCAGTTCGACGTCCGTCAAGCTACTGGAATT
AAGCCGCTCAGGCTCCCGCTACCGGGTTGAGTCCTATGCGGTCGAGCCGCTTCCGCCAAATGCTGTGGTGGAGAAAAATA
TCGCCGAGCTGGAGGGGGTGGGGCAGGCGTTGTCCCGGTTGCTGGCCAAAGCGAAAACCGGGGTGAAGTCGGCCGCTGTA
GCGGTTTCCGGTTCGGCGGTCATTACCAAAAGCATCGAGATGGAGTCGGGTCTGACCGACGATGAGCTGGAAAATCAGCT
CAAGATCGAAGCGGATCAGTACATTCCTTATCCATTGGAAGAAGTCGCTATCGACTTTGAGGTGCAGGGTTCCGCAGTTC
GCTCTCCAGGCCGAGTCGAAGTCCTGTTGGCCGCGTGCCGCAAGGAGAATGTTGAGATCCGAGAGGCAGCGCTCGCCTTG
GCGGGGTTGACGGCTAAGGTAGTCGATGTTGAAGCCTACGCCTTGGAGCGCTCCTATGGTCTGCTAGCTCCCCAGTTAGG
GGCGGGGCATGAAGAGTTGACTGTGGCGCTGGTGGATATAGGTGCGACCATGACGACTCTGAGCGTGCTACATAACGGTA
GAACGATTTATACGCGAGAGCAGTTGTTCGGTGGTCGCCAGCTGACAGAAGAAATCCAGCGTCGCTACGGCCTGTCGATG
GAAGAGGCTGGGCTCGCTAAAAAGCAGGGCGGGCTTCCAGATGACTACGACAGCGAAGTGTTGCAGCCGTTCAAAGAAGC
CGTCGTTCAACAAGTTTCTCGCTCGCTGCAGTTCTTCTTTGCCGCCGGCCAATTTCATGACGTGGATTACATCCTTCTCG
CCGGCGGCACGGCTTCGATTCAAGGGCTGGATCGCTTGATTCAGCAGAAAATCGGAACCCAGACTCTAGTTGCCAACCCC
TTCGCCGATATGGCCTTGAGTAACAAGGTCAACGCGGGTGCGCTTGCCAGCGATGCGCCGTCTCTGATGATTGCCTGTGG
GTTGGCCTTGAGGAGTTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

56.215

100

0.562
  pilM Acinetobacter baumannii D1279779

56.215

100

0.562
  comM Acinetobacter baylyi ADP1

54.52

100

0.545
  pilM Legionella pneumophila strain ERS1305867

47.458

100

0.475