Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   SCI_RS08830 Genome accession   NC_022238
Coordinates   1787166..1787594 (-) Length   142 a.a.
NCBI ID   WP_020999411.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. pharyngis C1050     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1782166..1792594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCI_RS08805 (SCI_1725) - 1783889..1785088 (-) 1200 WP_006267970.1 acetate kinase -
  SCI_RS08810 (SCI_1726) comYH 1785135..1786088 (-) 954 WP_020998065.1 class I SAM-dependent methyltransferase Machinery gene
  SCI_RS08815 (SCI_1727) comGG 1786173..1786499 (-) 327 WP_020998066.1 competence type IV pilus minor pilin ComGG -
  SCI_RS08820 (SCI_1728) comGF/cglF 1786480..1786917 (-) 438 WP_003035329.1 competence type IV pilus minor pilin ComGF Machinery gene
  SCI_RS08825 (SCI_1729) comGE/cglE 1786901..1787194 (-) 294 WP_003035318.1 competence type IV pilus minor pilin ComGE Machinery gene
  SCI_RS08830 (SCI_1730) comYD 1787166..1787594 (-) 429 WP_020999411.1 competence type IV pilus minor pilin ComGD Machinery gene
  SCI_RS08835 (SCI_1731) comYC 1787554..1787871 (-) 318 WP_020998068.1 competence type IV pilus major pilin ComGC Machinery gene
  SCI_RS08840 (SCI_1732) comYB 1787868..1788890 (-) 1023 WP_037592679.1 competence type IV pilus assembly protein ComGB Machinery gene
  SCI_RS08845 (SCI_1733) comYA 1788832..1789773 (-) 942 WP_006268058.1 competence type IV pilus ATPase ComGA Machinery gene
  SCI_RS08850 - 1789843..1790208 (-) 366 WP_022525692.1 DUF1033 family protein -
  SCI_RS08855 (SCI_1734) glnA 1790396..1791742 (-) 1347 WP_020998070.1 type I glutamate--ammonia ligase -
  SCI_RS08860 (SCI_1735) - 1791781..1792140 (-) 360 WP_003073972.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16224.69 Da        Isoelectric Point: 10.1968

>NTDB_id=61623 SCI_RS08830 WP_020999411.1 1787166..1787594(-) (comYD) [Streptococcus constellatus subsp. pharyngis C1050]
MQNIQKKLAQLQIKGFTLLESLLTLFMTSLLLLAVSGSVRSSFEQVEQQIFFLEFEHFYRESQKLSSAAQSQLDMNFSRE
RISNGYSYLAVPRSIQAPEDLTLHFDKAGGNSSLGKVIFQTKKQTITYQLYLGNGKFKKTIR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=61623 SCI_RS08830 WP_020999411.1 1787166..1787594(-) (comYD) [Streptococcus constellatus subsp. pharyngis C1050]
ATGCAAAACATACAAAAGAAGCTCGCACAGTTGCAGATTAAAGGTTTTACGCTTTTGGAAAGTTTGCTGACCTTATTTAT
GACGAGTCTCTTATTGCTTGCTGTGTCAGGTTCAGTACGTTCATCGTTTGAGCAAGTAGAACAGCAAATTTTCTTTCTAG
AGTTTGAGCATTTTTATCGGGAAAGTCAGAAGTTGAGTAGTGCAGCTCAAAGTCAGTTGGACATGAATTTTTCTCGCGAG
AGGATTTCCAATGGTTACAGCTATTTGGCAGTTCCTCGCTCGATTCAGGCTCCGGAAGACCTGACACTTCATTTTGACAA
GGCAGGCGGCAATTCATCGCTCGGAAAGGTTATCTTTCAGACAAAAAAGCAAACAATTACGTATCAATTATATCTAGGAA
ATGGAAAATTTAAGAAAACAATACGTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus gordonii str. Challis substr. CH1

61.94

94.366

0.585
  comGD/cglD Streptococcus mitis NCTC 12261

58.915

90.845

0.535
  comGD/cglD Streptococcus mitis SK321

58.268

89.437

0.521
  comGD/cglD Streptococcus pneumoniae Rx1

58.268

89.437

0.521
  comGD/cglD Streptococcus pneumoniae D39

58.268

89.437

0.521
  comGD/cglD Streptococcus pneumoniae R6

58.268

89.437

0.521
  comGD/cglD Streptococcus pneumoniae TIGR4

57.48

89.437

0.514
  comYD Streptococcus mutans UA140

50

91.549

0.458
  comYD Streptococcus mutans UA159

50

91.549

0.458

Multiple sequence alignment