Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LG309_RS15830 Genome accession   NZ_CP085231
Coordinates   3396085..3397302 (-) Length   405 a.a.
NCBI ID   WP_404395064.1    Uniprot ID   -
Organism   Stutzerimonas chloritidismutans strain ADH2-893     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3382794..3397302 3396085..3397302 within 0


Gene organization within MGE regions


Location: 3382794..3397302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG309_RS15745 (LG309_15720) rsmI 3382794..3383657 (-) 864 WP_041014820.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LG309_RS15750 (LG309_15725) - 3383782..3385584 (+) 1803 WP_404395050.1 penicillin-binding protein activator -
  LG309_RS15755 (LG309_15730) - 3385584..3385946 (+) 363 WP_014821349.1 YraN family protein -
  LG309_RS15760 (LG309_15735) - 3386056..3386649 (+) 594 WP_013981954.1 phosphoheptose isomerase -
  LG309_RS15765 (LG309_15740) - 3386646..3387224 (+) 579 WP_404395053.1 BON domain-containing protein -
  LG309_RS15770 (LG309_15745) - 3387264..3387662 (-) 399 WP_404395055.1 ClpXP protease specificity-enhancing factor -
  LG309_RS15775 (LG309_15750) - 3387675..3388292 (-) 618 WP_090519234.1 glutathione S-transferase N-terminal domain-containing protein -
  LG309_RS15780 (LG309_15755) - 3388381..3389160 (-) 780 WP_278379752.1 cytochrome c1 -
  LG309_RS15785 (LG309_15760) - 3389160..3390371 (-) 1212 WP_041014823.1 cytochrome bc complex cytochrome b subunit -
  LG309_RS15790 (LG309_15765) petA 3390371..3390964 (-) 594 WP_014821354.1 ubiquinol-cytochrome c reductase iron-sulfur subunit -
  LG309_RS15795 (LG309_15770) rpsI 3391221..3391613 (-) 393 WP_003302797.1 30S ribosomal protein S9 -
  LG309_RS15800 (LG309_15775) rplM 3391628..3392056 (-) 429 WP_014821355.1 50S ribosomal protein L13 -
  LG309_RS15805 (LG309_15780) - 3392488..3393525 (+) 1038 WP_404395059.1 NADP(H)-dependent aldo-keto reductase -
  LG309_RS15810 (LG309_15785) - 3393588..3394268 (+) 681 WP_045666681.1 energy-coupling factor ABC transporter permease -
  LG309_RS15815 (LG309_15790) yacG 3394279..3394476 (-) 198 WP_003302802.1 DNA gyrase inhibitor YacG -
  LG309_RS15820 (LG309_15795) coaE 3394473..3395081 (-) 609 WP_003302803.1 dephospho-CoA kinase -
  LG309_RS15825 (LG309_15800) pilD 3395213..3396082 (-) 870 WP_404395062.1 prepilin peptidase Machinery gene
  LG309_RS15830 (LG309_15805) pilC 3396085..3397302 (-) 1218 WP_404395064.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44304.26 Da        Isoelectric Point: 9.9329

>NTDB_id=616131 LG309_RS15830 WP_404395064.1 3396085..3397302(-) (pilC) [Stutzerimonas chloritidismutans strain ADH2-893]
MAEKALKTSVFTWEGTDRKGGKVKGELAGQSPALIKAQLRKQGINPLKVRKKAVSLLGAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDEIKQEVAAGNSFAGSLRKKPQYFDDLYCNLVESGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVAIIVSAILLIKVVPQFESVFQGFGAELPAFTKMVVGLSRWLQEWWYAVFAALFVAAFMFK
HTYKRSEKFRDSLDRLLLKMPIVGDILYKSVVARYARTLSTTFAAGVPLVDALDSVAGATGNVVFRNAVAKIRTDVSSGV
QLNFSMRTTGIFPSMAIQMTAIGEESGALDEMLDKLASFYEAEVDNMVDNLTTLMEPLIMAVLGVLVGGLIIAMYLPIFQ
LGAVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=616131 LG309_RS15830 WP_404395064.1 3396085..3397302(-) (pilC) [Stutzerimonas chloritidismutans strain ADH2-893]
ATGGCGGAAAAAGCGTTGAAAACCAGTGTGTTCACCTGGGAAGGCACCGATAGAAAAGGTGGCAAGGTCAAGGGGGAGCT
GGCAGGCCAGAGCCCGGCACTGATCAAGGCGCAACTCCGTAAACAGGGCATCAATCCGCTAAAAGTACGAAAGAAGGCTG
TTTCGCTATTAGGGGCCGGTAAGAAAATCAAGCCGATGGACATTGCGCTGTTTACCCGGCAGATGGCAACGATGATGAAG
GCGGGGGTACCGCTGCTTCAATCGTTTGACATTATTGGAGAGGGTTTCGACAACCCCAACATGCGCAAGCTGGTCGATGA
GATCAAGCAGGAGGTAGCAGCCGGTAATAGCTTTGCGGGTTCGCTGCGCAAGAAGCCTCAGTACTTCGATGATCTGTATT
GCAACTTGGTTGAATCCGGCGAGCAGTCCGGTGCGCTGGAGACATTGCTGGATCGGGTGGCGACCTACAAGGAAAAAACC
GAGGCGCTAAAGGCCAAGATCAAGAAAGCAATGACTTACCCCATTGCGGTCATCGTTGTTGCCATCATCGTGTCAGCGAT
TTTGCTCATCAAGGTGGTGCCTCAATTCGAAAGCGTATTCCAGGGCTTTGGCGCCGAGCTGCCCGCCTTTACGAAGATGG
TTGTGGGATTGTCGCGCTGGCTGCAGGAGTGGTGGTATGCCGTGTTCGCGGCGCTTTTCGTTGCAGCGTTCATGTTTAAA
CACACCTATAAGCGTTCCGAAAAATTTCGCGACTCGCTGGATCGGCTGCTGCTTAAGATGCCCATTGTTGGCGATATTTT
GTACAAATCCGTCGTCGCGCGTTATGCGCGTACGTTGTCGACCACGTTTGCCGCTGGTGTGCCACTTGTAGACGCTCTGG
ATTCAGTTGCGGGGGCGACGGGCAACGTGGTTTTCCGCAATGCAGTTGCGAAAATTCGTACCGATGTATCATCTGGCGTA
CAGCTGAACTTCTCGATGCGCACAACAGGTATTTTCCCTTCGATGGCTATTCAGATGACTGCTATCGGCGAGGAGTCAGG
GGCGTTGGACGAGATGCTGGACAAGCTAGCCAGCTTCTACGAGGCCGAGGTCGATAACATGGTGGACAATCTCACGACGC
TGATGGAGCCCTTGATCATGGCGGTGCTTGGTGTGCTGGTCGGCGGTTTGATCATTGCCATGTATCTCCCGATTTTCCAG
CTGGGTGCCGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

82.469

100

0.825
  pilC Acinetobacter baylyi ADP1

62.069

100

0.622
  pilC Acinetobacter baumannii D1279779

61.975

100

0.62
  pilC Legionella pneumophila strain ERS1305867

53.283

97.778

0.521
  pilG Neisseria gonorrhoeae MS11

45.771

99.259

0.454
  pilG Neisseria meningitidis 44/76-A

45.771

99.259

0.454
  pilC Vibrio cholerae strain A1552

43.21

100

0.432
  pilC Vibrio campbellii strain DS40M4

40.351

98.519

0.398