Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   SII_RS06335 Genome accession   NC_022237
Coordinates   1297319..1297933 (-) Length   204 a.a.
NCBI ID   WP_225791046.1    Uniprot ID   -
Organism   Streptococcus intermedius C270     
Function   degradation of ComX; degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 1292319..1302933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS06310 (SII_1245) - 1292744..1293508 (-) 765 WP_020998944.1 ABC transporter ATP-binding protein -
  SII_RS06315 (SII_1246) - 1293508..1294458 (-) 951 WP_020998945.1 branched-chain amino acid ABC transporter permease -
  SII_RS06320 (SII_1247) - 1294462..1295331 (-) 870 WP_003043257.1 branched-chain amino acid ABC transporter permease -
  SII_RS06325 (SII_1248) - 1295714..1296877 (-) 1164 WP_020998946.1 ABC transporter substrate-binding protein -
  SII_RS06330 - 1296960..1297228 (-) 269 Protein_1243 DUF2129 domain-containing protein -
  SII_RS06335 (SII_1249) clpP 1297319..1297933 (-) 615 WP_225791046.1 ATP-dependent Clp protease proteolytic subunit Regulator
  SII_RS06340 (SII_1250) upp 1298022..1298651 (-) 630 WP_003025639.1 uracil phosphoribosyltransferase -
  SII_RS06345 (SII_1251) mgtA 1298749..1301403 (-) 2655 WP_020998947.1 magnesium-translocating P-type ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22424.53 Da        Isoelectric Point: 4.6199

>NTDB_id=61531 SII_RS06335 WP_225791046.1 1297319..1297933(-) (clpP) [Streptococcus intermedius C270]
MSDEKENTMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGAVEDNMANSIIAQLLFLDAQDSTKDIYLYINTPGGSVSAG
LAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEK
ILADNSGKTVKQVHKDAERDYWMSAQETLDYGFIDEIMANNNLN

Nucleotide


Download         Length: 615 bp        

>NTDB_id=61531 SII_RS06335 WP_225791046.1 1297319..1297933(-) (clpP) [Streptococcus intermedius C270]
ATATCAGATGAAAAGGAGAATACAATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGGGAACGCTCGTACGATATTTA
CTCACGTCTTTTAAAAGATCGCATTATTATGCTAACTGGAGCAGTTGAAGACAACATGGCCAATTCTATTATTGCCCAAC
TGCTTTTCCTAGATGCTCAAGATAGTACAAAGGATATTTATCTTTATATCAATACGCCAGGAGGTTCTGTATCAGCGGGT
CTAGCGATTGTCGATACAATGAACTTCATCAAATCAGATGTTCAAACAATTGTCATGGGAATGGCTGCGTCCATGGGAAC
CATCATCGCTTCAAGTGGTGCTAAAGGCAAACGCTTTATGTTGCCAAATGCAGAGTACATGATTCATCAACCAATGGGTG
GAACTGGTGGCGGTACGCAACAAACCGATATGGCGATTGCTGCTGAACATTTGCTGAAAACTCGAAACAATTTGGAAAAA
ATTCTTGCAGATAACTCTGGTAAGACCGTTAAGCAAGTTCATAAAGATGCTGAACGTGACTACTGGATGAGTGCTCAAGA
AACACTAGATTATGGTTTCATTGATGAAATCATGGCAAATAACAACTTGAACTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(19-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pneumoniae Rx1

91.837

96.078

0.882
  clpP Streptococcus pneumoniae D39

91.837

96.078

0.882
  clpP Streptococcus pneumoniae R6

91.837

96.078

0.882
  clpP Streptococcus pneumoniae TIGR4

91.837

96.078

0.882
  clpP Streptococcus thermophilus LMD-9

91.795

95.588

0.877
  clpP Streptococcus thermophilus LMG 18311

91.795

95.588

0.877
  clpP Streptococcus mutans UA159

88.177

99.51

0.877
  clpP Streptococcus pyogenes MGAS315

91.282

95.588

0.873
  clpP Streptococcus pyogenes JRS4

91.282

95.588

0.873
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

85.128

95.588

0.814
  clpP Lactococcus lactis subsp. cremoris KW2

84.615

95.588

0.809
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.549

94.608

0.554
  clpP Bacillus subtilis subsp. subtilis str. 168

57.812

94.118

0.544

Multiple sequence alignment