Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   LIO32_RS07860 Genome accession   NZ_CP085087
Coordinates   1575693..1575911 (-) Length   72 a.a.
NCBI ID   WP_074389676.1    Uniprot ID   -
Organism   Streptococcus suis strain Ssuis_MA2     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1575693..1598351 1575693..1575911 within 0


Gene organization within MGE regions


Location: 1575693..1598351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO32_RS07860 prx 1575693..1575911 (-) 219 WP_074389676.1 Paratox Regulator
  LIO32_RS07865 - 1576119..1576856 (-) 738 WP_074389675.1 PlySs2 family phage lysin -
  LIO32_RS07870 - 1576840..1577190 (-) 351 WP_074389674.1 phage holin -
  LIO32_RS07875 - 1577201..1577536 (-) 336 WP_023371100.1 hypothetical protein -
  LIO32_RS07880 - 1577540..1577878 (-) 339 WP_023371101.1 hypothetical protein -
  LIO32_RS07885 - 1577987..1578259 (-) 273 WP_226960409.1 hypothetical protein -
  LIO32_RS07890 - 1578284..1578643 (-) 360 WP_074389673.1 hypothetical protein -
  LIO32_RS07895 - 1578670..1579044 (-) 375 WP_074389672.1 DUF6096 family protein -
  LIO32_RS07900 - 1579055..1579477 (-) 423 WP_074389671.1 phage tail tube protein -
  LIO32_RS07905 - 1579481..1579849 (-) 369 WP_002936856.1 hypothetical protein -
  LIO32_RS07910 - 1579846..1580358 (-) 513 WP_074389670.1 HK97-gp10 family putative phage morphogenesis protein -
  LIO32_RS07915 - 1580626..1580955 (-) 330 WP_074389668.1 phage head-tail connector protein -
  LIO32_RS07920 - 1580965..1581153 (-) 189 WP_044693053.1 hypothetical protein -
  LIO32_RS07925 - 1581164..1582180 (-) 1017 WP_074389667.1 sugar-binding protein -
  LIO32_RS07930 - 1582199..1582744 (-) 546 WP_074389666.1 DUF4355 domain-containing protein -
  LIO32_RS07935 - 1582857..1582997 (-) 141 WP_226960410.1 crAss001_48 related protein -
  LIO32_RS07940 terL 1583023..1584444 (-) 1422 WP_074389664.1 phage terminase large subunit -
  LIO32_RS07950 - 1584489..1584812 (-) 324 Protein_1523 ArpU family phage packaging/lysis transcriptional regulator -
  LIO32_RS07955 - 1584884..1585360 (-) 477 WP_074389663.1 helix-turn-helix transcriptional regulator -
  LIO32_RS07960 - 1585563..1585769 (-) 207 WP_074389661.1 hypothetical protein -
  LIO32_RS07965 - 1585766..1585909 (-) 144 WP_171840747.1 hypothetical protein -
  LIO32_RS07970 - 1585909..1586139 (-) 231 WP_074389660.1 hypothetical protein -
  LIO32_RS07975 - 1586521..1586736 (-) 216 WP_074389658.1 hypothetical protein -
  LIO32_RS07980 - 1586733..1587023 (-) 291 WP_074389657.1 hypothetical protein -
  LIO32_RS07985 - 1587023..1587265 (-) 243 WP_074389656.1 hypothetical protein -
  LIO32_RS07990 - 1587265..1587783 (-) 519 WP_079845830.1 DUF1642 domain-containing protein -
  LIO32_RS07995 - 1587780..1588088 (-) 309 WP_074389655.1 DUF1372 family protein -
  LIO32_RS08000 - 1588075..1588293 (-) 219 WP_024393800.1 hypothetical protein -
  LIO32_RS08005 - 1588280..1588687 (-) 408 WP_074389654.1 RusA family crossover junction endodeoxyribonuclease -
  LIO32_RS08010 - 1588684..1588893 (-) 210 WP_074389653.1 hypothetical protein -
  LIO32_RS08015 - 1589228..1591501 (-) 2274 WP_074389652.1 AAA family ATPase -
  LIO32_RS08020 - 1591510..1593093 (-) 1584 WP_074389651.1 DEAD/DEAH box helicase -
  LIO32_RS08025 - 1593103..1593675 (-) 573 WP_074389650.1 hypothetical protein -
  LIO32_RS08030 - 1593694..1594428 (-) 735 WP_074389649.1 hypothetical protein -
  LIO32_RS08035 - 1594430..1594849 (-) 420 WP_024393806.1 hypothetical protein -
  LIO32_RS08040 - 1594897..1595997 (-) 1101 WP_074389648.1 ATP-binding protein -
  LIO32_RS08045 - 1595997..1597289 (-) 1293 WP_074389647.1 AAA family ATPase -
  LIO32_RS08050 - 1597270..1597470 (-) 201 WP_074389646.1 hypothetical protein -
  LIO32_RS08055 - 1597503..1598351 (+) 849 WP_074389645.1 site-specific integrase -

Sequence

Protein


Download         Length: 72 a.a.        Molecular weight: 8186.24 Da        Isoelectric Point: 4.3895

>NTDB_id=615285 LIO32_RS07860 WP_074389676.1 1575693..1575911(-) (prx) [Streptococcus suis strain Ssuis_MA2]
MLEYEELKQAVDDGYVTGDTVNIVRRDGKVFDYVLPGEQVRSWEAVSEEKVEDVLKELKKTLSRGRGIVGEL

Nucleotide


Download         Length: 219 bp        

>NTDB_id=615285 LIO32_RS07860 WP_074389676.1 1575693..1575911(-) (prx) [Streptococcus suis strain Ssuis_MA2]
ATGTTAGAATACGAAGAATTAAAGCAAGCAGTAGATGATGGATATGTCACAGGCGATACGGTAAATATCGTACGTCGTGA
CGGTAAGGTATTTGACTATGTTTTACCAGGCGAGCAAGTCAGGTCGTGGGAAGCGGTGAGCGAGGAGAAGGTGGAAGATG
TGTTGAAGGAATTAAAAAAGACCTTGTCCAGAGGTCGGGGAATAGTCGGGGAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

63.333

83.333

0.528
  prx Streptococcus pyogenes MGAS8232

61.667

83.333

0.514
  prx Streptococcus pyogenes MGAS315

61.667

83.333

0.514
  prx Streptococcus pyogenes MGAS315

58.333

83.333

0.486
  prx Streptococcus pyogenes MGAS315

66.667

58.333

0.389
  prx Streptococcus pyogenes MGAS315

64.286

58.333

0.375
  prx Streptococcus pyogenes MGAS315

61.905

58.333

0.361