Detailed information NTG0615099

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: LF296_RS01400
• Genome accession: NZ_CP085083
• Coordinates: 300726..301784 (+)
• Length: 352 a.a.
• NCBI ID: WP_004776062.1
• Uniprot ID: N9NEC6
• Organism: Acinetobacter vivianii strain KJ-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 295726..306784

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LF296_RS01385 (LF296_01385)	mraY	295959..297077 (+)	1119	WP_004776067.1	phospho-N-acetylmuramoyl-pentapeptide- transferase	-
LF296_RS01390 (LF296_01390)	-	297137..297955 (+)	819	WP_272655299.1	putative RNA methyltransferase	-
LF296_RS01395 (LF296_01395)	ponA	297971..300562 (-)	2592	WP_272655300.1	penicillin-binding protein PBP1a	-
LF296_RS01400 (LF296_01400)	comM	300726..301784 (+)	1059	WP_004776062.1	pilus assembly protein PilM	Machinery gene
LF296_RS01405 (LF296_01405)	pilN	301784..302440 (+)	657	WP_123775342.1	PilN domain-containing protein	Machinery gene
LF296_RS01410 (LF296_01410)	pilO	302437..303156 (+)	720	WP_272655301.1	type 4a pilus biogenesis protein PilO	Machinery gene
LF296_RS01415 (LF296_01415)	pilP	303160..303687 (+)	528	WP_004776058.1	pilus assembly protein PilP	Machinery gene
LF296_RS01420 (LF296_01420)	pilQ	303749..305884 (+)	2136	WP_171068057.1	type IV pilus secretin PilQ family protein	Machinery gene
LF296_RS01425 (LF296_01425)	aroK	305895..306464 (+)	570	WP_104021896.1	shikimate kinase AroK	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 39086.76 Da
• Isoelectric Point: 4.5488

>NTDB_id=615099 LF296_RS01400 WP_004776062.1 300726..301784(+) (comM) [Acinetobacter vivianii strain KJ-1]
MLRLYRKPNKGLVGVDISSTTVKLLELSVKNGRYWVESYAVMPLPENSVVEKSILNPEAVGDALERVVNLANPHTTNVAF
AVPTSMVINKIIEMDADMSDEEREVQIRMDAEQYIPFPLDEVSLDFEVLPDRLANANRVNVLLVATRTENVDTRVEVLEL
AGLTAKIAEVESYAMERAFSVFADTLPMGANTVGILDIGHTMTTLSVMQKGKIIYTREQVFGGRQLTQDVQSRYGLSFEE
AGRAKKERTLPDDYDTEVLEPFLDAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSPQIDIKKIENDASSLMVACGLAMRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=615099 LF296_RS01400 WP_004776062.1 300726..301784(+) (comM) [Acinetobacter vivianii strain KJ-1]
GTGCTCAGGTTATATCGTAAACCAAATAAGGGGTTAGTGGGTGTCGATATTAGTTCGACAACTGTTAAATTATTGGAGCT
CTCTGTAAAGAACGGTAGATATTGGGTTGAAAGTTATGCGGTGATGCCATTACCTGAAAATAGTGTAGTGGAAAAAAGCA
TTCTGAACCCAGAGGCGGTGGGTGATGCGCTTGAGAGAGTCGTCAACCTTGCGAATCCTCACACCACCAACGTTGCATTT
GCAGTACCTACTTCTATGGTCATTAACAAGATTATAGAAATGGATGCTGACATGTCGGATGAAGAACGTGAAGTTCAGAT
CCGTATGGACGCTGAGCAATACATTCCGTTCCCGTTAGATGAAGTGAGTCTGGATTTTGAGGTTTTACCTGACCGTTTGG
CCAATGCAAACCGGGTAAACGTACTGCTCGTGGCCACGCGAACAGAAAATGTAGATACGCGTGTCGAAGTGCTTGAACTG
GCTGGTCTCACTGCAAAAATCGCAGAAGTTGAAAGTTACGCAATGGAGCGTGCTTTTAGTGTCTTTGCCGATACCTTGCC
AATGGGTGCCAATACGGTCGGTATTCTGGATATTGGTCACACCATGACCACACTTTCTGTGATGCAGAAAGGTAAAATTA
TCTATACCCGTGAGCAAGTGTTTGGCGGTCGTCAACTGACTCAAGATGTACAAAGCCGTTATGGCTTGTCTTTTGAGGAA
GCGGGTCGTGCTAAAAAAGAAAGAACACTGCCAGACGATTATGATACCGAGGTGCTTGAGCCTTTCCTTGATGCAGTCGT
TCAGCAAGCTGCACGTTCACTCCAGTTCTTCTTTTCATCTTCTCAGTTCAATGAGATTGATCATATTTTACTTGCTGGCG
GGAATGCCAATATTCCTGGTCTGGCGAAATTATTACAACAAAAGCTCGGTTACCGAGTGACCATTGCCAATCCATTTTTA
CAAATGGGTTTTTCTCCCCAAATTGATATTAAAAAAATTGAAAATGATGCTTCCTCTTTAATGGTGGCATGTGGTTTGGC
AATGAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-351)

3D structure

• AlphaFold DB: N9NEC6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	87.784	100	0.878
pilM	Acinetobacter baumannii D1279779	87.5	100	0.875
comM	Acinetobacter baylyi ADP1	81.818	100	0.818
pilM	Legionella pneumophila strain ERS1305867	41.243	100	0.415