Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LF296_RS01405 Genome accession   NZ_CP085083
Coordinates   301784..302440 (+) Length   218 a.a.
NCBI ID   WP_123775342.1    Uniprot ID   A0AAJ6P5J7
Organism   Acinetobacter vivianii strain KJ-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 296784..307440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF296_RS01390 (LF296_01390) - 297137..297955 (+) 819 WP_272655299.1 putative RNA methyltransferase -
  LF296_RS01395 (LF296_01395) ponA 297971..300562 (-) 2592 WP_272655300.1 penicillin-binding protein PBP1a -
  LF296_RS01400 (LF296_01400) comM 300726..301784 (+) 1059 WP_004776062.1 pilus assembly protein PilM Machinery gene
  LF296_RS01405 (LF296_01405) pilN 301784..302440 (+) 657 WP_123775342.1 PilN domain-containing protein Machinery gene
  LF296_RS01410 (LF296_01410) pilO 302437..303156 (+) 720 WP_272655301.1 type 4a pilus biogenesis protein PilO Machinery gene
  LF296_RS01415 (LF296_01415) pilP 303160..303687 (+) 528 WP_004776058.1 pilus assembly protein PilP Machinery gene
  LF296_RS01420 (LF296_01420) pilQ 303749..305884 (+) 2136 WP_171068057.1 type IV pilus secretin PilQ family protein Machinery gene
  LF296_RS01425 (LF296_01425) aroK 305895..306464 (+) 570 WP_104021896.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24250.68 Da        Isoelectric Point: 6.9924

>NTDB_id=615100 LF296_RS01405 WP_123775342.1 301784..302440(+) (pilN) [Acinetobacter vivianii strain KJ-1]
MAKINLLPWRDELREQRKKQFVAFCVGVAALGVASVFSGWMYFDHKLSDQEQANQLIVSTNQNLDTQLKALDGLQERRNA
IIERMKLIQGLQGQRPVVVRLVDELVRVTPPTMYLTKFTRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
VDENKNKDKTASSLVPRVEENYGSFIVTVDLGEIGTTVEAAPTTEQAASGTVAVGTAK

Nucleotide


Download         Length: 657 bp        

>NTDB_id=615100 LF296_RS01405 WP_123775342.1 301784..302440(+) (pilN) [Acinetobacter vivianii strain KJ-1]
ATGGCAAAGATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAACAAAGAAAGAAACAGTTTGTCGCTTTTTGTGTTGG
GGTTGCTGCATTAGGGGTTGCATCGGTCTTTTCAGGATGGATGTATTTTGATCATAAATTGAGTGATCAGGAGCAGGCCA
ATCAGTTGATTGTGAGTACCAATCAGAATTTGGATACACAACTGAAAGCTCTGGATGGTTTGCAAGAACGCCGTAATGCC
ATTATTGAGCGCATGAAGCTGATTCAGGGTTTACAAGGTCAGCGTCCAGTTGTGGTACGTCTGGTGGATGAACTGGTTCG
CGTCACACCACCAACTATGTACTTGACCAAGTTTACCCGTACAGGTGATAAATTCACCATCGAAGGTAAAGCAGAAAGCC
CGAATACCGTGGCTGAACTGTTGCGTAATCTTGAGGCTTCGCCGTGGTATCGCAATGCCTTTATGAATTCATTCCTTGCA
GTGGACGAAAACAAAAATAAAGATAAAACAGCAAGTTCGCTGGTTCCTCGGGTTGAGGAAAATTATGGAAGTTTTATTGT
CACTGTAGATTTGGGTGAGATTGGTACAACTGTTGAGGCTGCACCAACAACAGAACAGGCAGCATCAGGGACAGTAGCAG
TGGGGACCGCGAAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

76.364

100

0.771
  comN Acinetobacter baylyi ADP1

76.768

90.826

0.697