Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NQZ95_RS06980 Genome accession   NZ_CP102138
Coordinates   1393359..1393955 (-) Length   198 a.a.
NCBI ID   WP_024386938.1    Uniprot ID   -
Organism   Streptococcus suis strain M102942_S11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1388359..1398955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ95_RS06960 (NQZ95_06960) - 1389461..1390159 (-) 699 WP_012775213.1 TIGR02206 family membrane protein -
  NQZ95_RS06965 (NQZ95_06965) murF 1390250..1391611 (-) 1362 WP_024394415.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  NQZ95_RS06970 (NQZ95_06970) - 1391740..1392120 (-) 381 WP_024401154.1 OsmC family protein -
  NQZ95_RS06975 (NQZ95_06975) - 1392208..1393254 (-) 1047 WP_015646629.1 D-alanine--D-alanine ligase -
  NQZ95_RS06980 (NQZ95_06980) recR 1393359..1393955 (-) 597 WP_024386938.1 recombination mediator RecR Machinery gene
  NQZ95_RS06985 (NQZ95_06985) pbp2b 1393964..1396036 (-) 2073 WP_257105076.1 penicillin-binding protein PBP2B -
  NQZ95_RS06990 (NQZ95_06990) - 1396128..1396577 (-) 450 WP_257105077.1 ATP-binding cassette domain-containing protein -
  NQZ95_RS06995 (NQZ95_06995) vicX 1397138..1397941 (-) 804 WP_002935843.1 MBL fold metallo-hydrolase Regulator

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21679.77 Da        Isoelectric Point: 4.4757

>NTDB_id=615102 NQZ95_RS06980 WP_024386938.1 1393359..1393955(-) (recR) [Streptococcus suis strain M102942_S11]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLSYCSVCGNLTDQDPCAICQDSTRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=615102 NQZ95_RS06980 WP_024386938.1 1393359..1393955(-) (recR) [Streptococcus suis strain M102942_S11]
ATGCTTTACCCTACACCTATTGCCAAGTTAATTGATAGCTATTCTAAATTGCCAGGTATCGGTATAAAAACGGCTACCCG
TTTAGCTTTTTATACTATTGGCATGGAGGATGATGTCGTTAATGAATTTGCTAAAAATTTATTGGCAGCTAAGCGAGACC
TATCTTATTGCTCCGTTTGTGGTAATCTGACAGATCAGGACCCCTGTGCCATTTGCCAGGACTCAACGCGAGACCAATCT
ACTATTTTGATTGTAGAGGATAGTCGAGATGTTACAGCTTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATCGGACCAGATGATATTAATTTGAAAACCCTCCTCACTCGCCTAATGGATA
ATGAGGTTACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAGGCTACATCTATGTATATCTCACGTGTCCTC
AAACCTGCGGGAATCAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAACCGCACAGAGCTATAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.374

100

0.874
  recR Bacillus subtilis subsp. subtilis str. 168

64.646

100

0.646
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485