Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LF296_RS01420 Genome accession   NZ_CP085083
Coordinates   303749..305884 (+) Length   711 a.a.
NCBI ID   WP_171068057.1    Uniprot ID   A0AAJ6NM93
Organism   Acinetobacter vivianii strain KJ-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 298749..310884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF296_RS01400 (LF296_01400) comM 300726..301784 (+) 1059 WP_004776062.1 pilus assembly protein PilM Machinery gene
  LF296_RS01405 (LF296_01405) pilN 301784..302440 (+) 657 WP_123775342.1 PilN domain-containing protein Machinery gene
  LF296_RS01410 (LF296_01410) pilO 302437..303156 (+) 720 WP_272655301.1 type 4a pilus biogenesis protein PilO Machinery gene
  LF296_RS01415 (LF296_01415) pilP 303160..303687 (+) 528 WP_004776058.1 pilus assembly protein PilP Machinery gene
  LF296_RS01420 (LF296_01420) pilQ 303749..305884 (+) 2136 WP_171068057.1 type IV pilus secretin PilQ family protein Machinery gene
  LF296_RS01425 (LF296_01425) aroK 305895..306464 (+) 570 WP_104021896.1 shikimate kinase AroK -
  LF296_RS01430 (LF296_01430) aroB 306484..307566 (+) 1083 WP_272655302.1 3-dehydroquinate synthase -
  LF296_RS01435 (LF296_01435) - 307586..308443 (+) 858 WP_272655303.1 hypothetical protein -

Sequence

Protein


Download         Length: 711 a.a.        Molecular weight: 77345.88 Da        Isoelectric Point: 5.7212

>NTDB_id=615103 LF296_RS01420 WP_171068057.1 303749..305884(+) (pilQ) [Acinetobacter vivianii strain KJ-1]
MNHAFRQFSMAAITLAVMQVASAQVSMTNIVPMNLAEQGTEIRVMFNGLPPQPQAYQLEQPARLILDFDKAQQTLKQTSI
PVSTNEASSVEVAADDQRSRVIVNLKDAGAFTTRVEGNTFVLKINSAKPAAMAAPVAAVRQAQQGISNIGFQRGNQGEGL
VVIDLLGNNTPVDVQQQGSKIVVRTMGNKIPTHLARRLNTNDFATPVASIDAYNDKGNGVITIQSAGSYEYMAYQAENKL
TISLKRPEDKSPTKAKTQTYTGNKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIVLKTKN
LDKRRNGNVIWIAPVSELIKAEEEEAKAQAQSVKLAPLQTEYITLSYAKAADIEKLITQGKNANTNNGNSSNSISNDNLA
GGLLSPRGTISIDPRTNTLIVNDTSQKIDQIRKMVDLLDVSVKQVMIEARIVSASTDFTKEMGVKWGILSQGITNNNDLL
VGGSDTTLWDLRKPEKDSDTGGWKYEIERPDNLNVDLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGYGEVISTPKV
MTADKQAAKIESGKKIPYTSSTGGGANAVPKTEFIDATLSLDVTPSITPDGKVMMKLNITKDSQSTPTPTGQLTINKNQI
DTNVLVDNGETVVLGGIFEQENISSQVKVPFLGDLPYVGRLFRRDLKTDNKRELLIFITPRIVNDTLTRNH

Nucleotide


Download         Length: 2136 bp        

>NTDB_id=615103 LF296_RS01420 WP_171068057.1 303749..305884(+) (pilQ) [Acinetobacter vivianii strain KJ-1]
ATGAATCATGCATTCCGTCAATTTTCTATGGCTGCGATTACGCTTGCGGTGATGCAGGTTGCATCAGCACAAGTCAGCAT
GACCAATATTGTACCCATGAATTTGGCTGAACAAGGTACAGAAATCCGCGTCATGTTTAATGGTTTGCCACCGCAACCAC
AAGCTTATCAGCTTGAACAGCCTGCTCGCTTGATTCTGGATTTTGATAAAGCACAACAAACCTTAAAACAAACCTCTATT
CCAGTTTCAACCAATGAAGCAAGTTCTGTTGAAGTTGCGGCAGATGACCAACGTTCTCGTGTGATTGTGAATTTGAAAGA
TGCTGGTGCATTTACGACACGTGTGGAAGGTAATACTTTTGTACTGAAAATTAATTCAGCCAAGCCTGCGGCAATGGCAG
CTCCTGTCGCTGCTGTGCGTCAGGCACAACAAGGTATTTCCAATATTGGTTTCCAGCGTGGCAATCAAGGCGAAGGGCTG
GTGGTTATTGATTTATTAGGCAATAACACACCAGTAGATGTGCAACAACAAGGCAGTAAGATTGTTGTGCGTACCATGGG
GAATAAAATCCCGACGCATTTGGCTCGTCGCTTAAATACCAATGATTTCGCAACACCTGTTGCAAGTATCGATGCTTATA
ACGACAAGGGAAATGGTGTCATTACCATTCAGTCTGCGGGTAGCTATGAATATATGGCTTATCAGGCAGAAAATAAACTG
ACTATCAGCTTAAAGCGTCCTGAAGATAAATCACCGACCAAGGCCAAGACACAAACCTATACAGGGAATAAAATTTCTTT
AGACTTCCAAGATATTGAAGTACGCCGTGTATTACAGTTACTTGCAGACTTTACCGGTATCAATATGGTGGCCGCAGATA
CGGTGCAAGGTAATATCACCTTACGTCTTAAAGATGTGCCGTGGGATCAGGCTTTGGATATTGTCTTGAAAACCAAGAAT
CTGGACAAGCGTCGTAATGGTAATGTGATCTGGATTGCACCAGTTTCAGAGCTAATTAAGGCTGAGGAAGAAGAAGCGAA
AGCGCAGGCACAAAGCGTGAAACTGGCGCCTCTGCAAACTGAATATATTACGTTAAGCTATGCAAAAGCAGCGGATATTG
AAAAGCTGATTACCCAAGGGAAGAATGCGAACACCAACAATGGTAATTCTTCAAACTCAATCAGCAATGACAATTTAGCG
GGTGGCTTGTTAAGTCCTCGCGGAACCATTTCGATTGACCCGCGTACCAATACCTTGATCGTGAATGATACTTCTCAGAA
AATTGACCAGATCCGTAAGATGGTTGATCTGTTGGACGTATCGGTTAAACAGGTCATGATTGAAGCACGTATTGTCAGTG
CTAGTACCGATTTCACCAAAGAGATGGGGGTGAAATGGGGAATCTTGTCTCAAGGTATTACCAACAATAATGACCTATTA
GTGGGTGGTAGTGATACAACTTTATGGGATTTAAGAAAGCCTGAAAAAGATAGCGATACAGGTGGCTGGAAATATGAAAT
TGAACGTCCAGATAACCTGAATGTCGACTTGGGTGCAGTTACACCTGGGGCAAGCCGTATTGCTTTTGGTTTAATTAGCC
TGTCAGACTTTATGTTGGATTTAGAGCTTTCAGCAGTACAGGCCGATGGCTATGGCGAAGTGATTTCCACGCCAAAAGTC
ATGACTGCCGACAAGCAAGCTGCAAAAATTGAATCAGGTAAGAAAATTCCTTATACCTCATCAACTGGTGGTGGTGCGAA
TGCCGTGCCTAAAACAGAATTTATTGATGCGACCTTAAGTCTGGATGTGACACCAAGCATTACTCCTGACGGTAAAGTCA
TGATGAAACTGAACATTACCAAAGACTCGCAAAGTACGCCGACACCAACAGGACAGCTCACCATTAATAAAAACCAGATT
GATACCAATGTACTGGTGGATAATGGCGAAACCGTAGTGCTTGGTGGTATTTTTGAGCAGGAAAATATCAGCTCTCAAGT
GAAAGTACCATTCTTGGGTGACTTACCTTATGTCGGACGCTTATTCCGCCGTGACCTGAAAACAGACAATAAACGTGAGC
TACTTATTTTTATTACGCCGAGAATTGTTAATGACACTTTAACCAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(361-444)

Secretin and TonB N terminus short domain (STN)

(292-334)

AMIN domain (AMIN)

(37-120)

Bacterial type II and III secretion system protein (Secretin)

(545-703)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

75.137

100

0.769
  pilQ Acinetobacter baumannii strain A118

75

100

0.768
  comQ Acinetobacter baylyi ADP1

72.462

100

0.733
  pilQ Pseudomonas aeruginosa PAK

42.569

97.468

0.415
  pilQ Legionella pneumophila strain ERS1305867

38.265

98.875

0.378
  pilQ Legionella pneumophila strain Lp02

38.122

98.875

0.377