Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   LG295_RS06970 Genome accession   NZ_CP085024
Coordinates   1451014..1451331 (+) Length   105 a.a.
NCBI ID   WP_107531903.1    Uniprot ID   -
Organism   Staphylococcus pseudoxylosus strain SLM-183     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1446014..1456331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG295_RS06940 (LG295_06950) - 1446366..1446563 (+) 198 WP_404475538.1 YqgQ family protein -
  LG295_RS06945 (LG295_06955) - 1446949..1447935 (+) 987 WP_107531899.1 glucokinase -
  LG295_RS06950 (LG295_06960) - 1447935..1448258 (+) 324 WP_029377188.1 MTH1187 family thiamine-binding protein -
  LG295_RS06955 (LG295_06965) - 1448260..1448883 (+) 624 WP_107531900.1 MBL fold metallo-hydrolase -
  LG295_RS06960 (LG295_06970) comGA 1448981..1449955 (+) 975 WP_404475541.1 competence type IV pilus ATPase ComGA Machinery gene
  LG295_RS06965 (LG295_06975) comGB 1449927..1450994 (+) 1068 WP_325999120.1 competence type IV pilus assembly protein ComGB -
  LG295_RS06970 (LG295_06980) comGC 1451014..1451331 (+) 318 WP_107531903.1 competence type IV pilus major pilin ComGC Machinery gene
  LG295_RS06975 (LG295_06985) comGD 1451309..1451755 (+) 447 WP_404475543.1 competence type IV pilus minor pilin ComGD -
  LG295_RS06980 (LG295_06990) - 1451742..1452041 (+) 300 WP_107558884.1 hypothetical protein -
  LG295_RS06985 (LG295_06995) comGF 1452013..1452450 (+) 438 WP_404475545.1 competence type IV pilus minor pilin ComGF -
  LG295_RS06990 (LG295_07000) - 1452657..1453130 (+) 474 WP_107558588.1 shikimate kinase -
  LG295_RS06995 (LG295_07005) gcvT 1453316..1454407 (+) 1092 WP_107558583.1 glycine cleavage system aminomethyltransferase GcvT -
  LG295_RS07000 (LG295_07010) gcvPA 1454425..1455777 (+) 1353 WP_404475547.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11867.06 Da        Isoelectric Point: 9.4891

>NTDB_id=614693 LG295_RS06970 WP_107531903.1 1451014..1451331(+) (comGC) [Staphylococcus pseudoxylosus strain SLM-183]
MKNFKYKFNKKAFTLIEMLLVLLIISLLLILIIPNIAKQSSHIQTTSCEAQLKMVDSQIEAYSLKFNKKPTTMEELVNEG
YIKENQKRCKSGALISINDGEAVAS

Nucleotide


Download         Length: 318 bp        

>NTDB_id=614693 LG295_RS06970 WP_107531903.1 1451014..1451331(+) (comGC) [Staphylococcus pseudoxylosus strain SLM-183]
ATGAAAAATTTTAAATATAAGTTTAACAAAAAGGCATTCACACTCATTGAAATGTTATTGGTTTTACTAATAATAAGTTT
GTTATTAATATTAATTATACCTAATATAGCTAAACAATCTTCACACATACAAACTACTAGTTGTGAAGCACAGCTTAAAA
TGGTAGATAGCCAAATTGAAGCTTATAGCTTGAAATTCAATAAGAAGCCAACTACTATGGAAGAACTCGTTAATGAAGGT
TATATAAAAGAGAATCAAAAACGATGTAAATCAGGCGCATTAATATCTATCAATGATGGTGAAGCAGTTGCAAGTTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

67.647

97.143

0.657
  comGC Staphylococcus aureus MW2

67.647

97.143

0.657
  comGC/cglC Streptococcus pneumoniae D39

39.623

100

0.4
  comGC/cglC Streptococcus pneumoniae R6

39.623

100

0.4
  comGC/cglC Streptococcus pneumoniae TIGR4

39.623

100

0.4
  comGC/cglC Streptococcus pneumoniae Rx1

39.623

100

0.4
  comGC/cglC Streptococcus mitis SK321

41.667

91.429

0.381
  comGC Bacillus subtilis subsp. subtilis str. 168

41.489

89.524

0.371
  comYC Streptococcus mutans UA140

49.351

73.333

0.362
  comYC Streptococcus mutans UA159

49.351

73.333

0.362