Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | LG295_RS06960 | Genome accession | NZ_CP085024 |
| Coordinates | 1448981..1449955 (+) | Length | 324 a.a. |
| NCBI ID | WP_404475541.1 | Uniprot ID | - |
| Organism | Staphylococcus pseudoxylosus strain SLM-183 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1443981..1454955
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LG295_RS06925 (LG295_06935) | rpmG | 1444091..1444240 (+) | 150 | WP_002483181.1 | 50S ribosomal protein L33 | - |
| LG295_RS06930 (LG295_06940) | - | 1444371..1444913 (+) | 543 | WP_107531628.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| LG295_RS06935 (LG295_06945) | - | 1444925..1446382 (+) | 1458 | WP_404476814.1 | rhomboid family intramembrane serine protease | - |
| LG295_RS06940 (LG295_06950) | - | 1446366..1446563 (+) | 198 | WP_404475538.1 | YqgQ family protein | - |
| LG295_RS06945 (LG295_06955) | - | 1446949..1447935 (+) | 987 | WP_107531899.1 | glucokinase | - |
| LG295_RS06950 (LG295_06960) | - | 1447935..1448258 (+) | 324 | WP_029377188.1 | MTH1187 family thiamine-binding protein | - |
| LG295_RS06955 (LG295_06965) | - | 1448260..1448883 (+) | 624 | WP_107531900.1 | MBL fold metallo-hydrolase | - |
| LG295_RS06960 (LG295_06970) | comGA | 1448981..1449955 (+) | 975 | WP_404475541.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| LG295_RS06965 (LG295_06975) | comGB | 1449927..1450994 (+) | 1068 | WP_325999120.1 | competence type IV pilus assembly protein ComGB | - |
| LG295_RS06970 (LG295_06980) | comGC | 1451014..1451331 (+) | 318 | WP_107531903.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| LG295_RS06975 (LG295_06985) | comGD | 1451309..1451755 (+) | 447 | WP_404475543.1 | competence type IV pilus minor pilin ComGD | - |
| LG295_RS06980 (LG295_06990) | - | 1451742..1452041 (+) | 300 | WP_107558884.1 | hypothetical protein | - |
| LG295_RS06985 (LG295_06995) | comGF | 1452013..1452450 (+) | 438 | WP_404475545.1 | competence type IV pilus minor pilin ComGF | - |
| LG295_RS06990 (LG295_07000) | - | 1452657..1453130 (+) | 474 | WP_107558588.1 | shikimate kinase | - |
| LG295_RS06995 (LG295_07005) | gcvT | 1453316..1454407 (+) | 1092 | WP_107558583.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37375.67 Da Isoelectric Point: 9.4658
>NTDB_id=614692 LG295_RS06960 WP_404475541.1 1448981..1449955(+) (comGA) [Staphylococcus pseudoxylosus strain SLM-183]
MKLLFNSMIEKAINNDASDIHFIPADKEVMIKFRIRDDLKSIETLQLNTYLKLLTYMKYQAGLDVSKHNVAQSGRYIYKL
KQIYFLRISTLPLSLGNESCVIRIIPQYFQKHKNNQNITHLYNLINKKQGLILLSGPTGSGKSTLMYHMLSYAKEHLNLN
IITIEEPVEQLINGITQISLNEKAGINYESSFKAILRCDPDIILIGEIRDANVAKYVIQASLSGHLVLTTIHASNCKGVI
LRLLEMGITVQQLIQSIISILNQRLITTKEDKRELVYEQMTREDIYHFFKNSYTLPKDFRNLSYKLNKMSKEGMICETSM
ERYL
MKLLFNSMIEKAINNDASDIHFIPADKEVMIKFRIRDDLKSIETLQLNTYLKLLTYMKYQAGLDVSKHNVAQSGRYIYKL
KQIYFLRISTLPLSLGNESCVIRIIPQYFQKHKNNQNITHLYNLINKKQGLILLSGPTGSGKSTLMYHMLSYAKEHLNLN
IITIEEPVEQLINGITQISLNEKAGINYESSFKAILRCDPDIILIGEIRDANVAKYVIQASLSGHLVLTTIHASNCKGVI
LRLLEMGITVQQLIQSIISILNQRLITTKEDKRELVYEQMTREDIYHFFKNSYTLPKDFRNLSYKLNKMSKEGMICETSM
ERYL
Nucleotide
Download Length: 975 bp
>NTDB_id=614692 LG295_RS06960 WP_404475541.1 1448981..1449955(+) (comGA) [Staphylococcus pseudoxylosus strain SLM-183]
TTGAAGCTATTGTTTAATAGTATGATTGAAAAGGCAATTAATAATGATGCATCAGATATACATTTTATTCCTGCAGATAA
AGAAGTTATGATTAAATTTAGAATCCGTGATGATTTAAAATCAATAGAAACATTGCAATTAAATACGTATTTGAAATTAC
TAACCTATATGAAATACCAAGCTGGACTAGATGTCTCTAAACACAACGTTGCTCAGAGTGGTAGATATATTTATAAATTA
AAACAAATTTACTTCCTTAGAATATCAACGCTTCCTTTATCTCTAGGAAATGAAAGTTGCGTTATTAGGATTATTCCGCA
ATATTTTCAAAAGCATAAAAATAACCAGAACATAACGCATTTATATAATCTAATAAACAAAAAACAAGGATTAATTTTAT
TGAGTGGACCTACTGGCTCTGGAAAAAGTACGTTAATGTATCACATGTTATCTTATGCGAAAGAACACTTAAACTTAAAT
ATAATTACAATTGAAGAACCTGTTGAACAATTAATAAATGGCATAACGCAAATTTCATTGAATGAAAAGGCAGGGATAAA
TTATGAAAGTTCTTTTAAAGCAATATTGCGATGCGATCCAGATATTATTTTAATAGGTGAGATAAGAGATGCAAATGTAG
CTAAATATGTGATACAAGCCAGTTTAAGCGGCCATTTAGTACTTACAACAATTCATGCCAGTAATTGCAAAGGTGTGATA
TTAAGGCTGCTAGAAATGGGTATAACAGTCCAACAGCTTATACAATCAATCATTAGTATATTAAATCAAAGGCTTATTAC
TACTAAAGAAGATAAAAGGGAACTTGTATATGAACAGATGACTAGAGAAGATATTTATCACTTCTTTAAAAACAGTTATA
CATTACCCAAAGATTTCCGTAACTTATCTTATAAGTTAAACAAAATGTCAAAAGAGGGGATGATATGTGAAACATCGATG
GAACGTTATCTCTAA
TTGAAGCTATTGTTTAATAGTATGATTGAAAAGGCAATTAATAATGATGCATCAGATATACATTTTATTCCTGCAGATAA
AGAAGTTATGATTAAATTTAGAATCCGTGATGATTTAAAATCAATAGAAACATTGCAATTAAATACGTATTTGAAATTAC
TAACCTATATGAAATACCAAGCTGGACTAGATGTCTCTAAACACAACGTTGCTCAGAGTGGTAGATATATTTATAAATTA
AAACAAATTTACTTCCTTAGAATATCAACGCTTCCTTTATCTCTAGGAAATGAAAGTTGCGTTATTAGGATTATTCCGCA
ATATTTTCAAAAGCATAAAAATAACCAGAACATAACGCATTTATATAATCTAATAAACAAAAAACAAGGATTAATTTTAT
TGAGTGGACCTACTGGCTCTGGAAAAAGTACGTTAATGTATCACATGTTATCTTATGCGAAAGAACACTTAAACTTAAAT
ATAATTACAATTGAAGAACCTGTTGAACAATTAATAAATGGCATAACGCAAATTTCATTGAATGAAAAGGCAGGGATAAA
TTATGAAAGTTCTTTTAAAGCAATATTGCGATGCGATCCAGATATTATTTTAATAGGTGAGATAAGAGATGCAAATGTAG
CTAAATATGTGATACAAGCCAGTTTAAGCGGCCATTTAGTACTTACAACAATTCATGCCAGTAATTGCAAAGGTGTGATA
TTAAGGCTGCTAGAAATGGGTATAACAGTCCAACAGCTTATACAATCAATCATTAGTATATTAAATCAAAGGCTTATTAC
TACTAAAGAAGATAAAAGGGAACTTGTATATGAACAGATGACTAGAGAAGATATTTATCACTTCTTTAAAAACAGTTATA
CATTACCCAAAGATTTCCGTAACTTATCTTATAAGTTAAACAAAATGTCAAAAGAGGGGATGATATGTGAAACATCGATG
GAACGTTATCTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
62.963 |
100 |
0.63 |
| comGA | Staphylococcus aureus N315 |
62.963 |
100 |
0.63 |