Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   NQZ84_RS03510 Genome accession   NZ_CP102094
Coordinates   707444..708106 (+) Length   220 a.a.
NCBI ID   WP_044768730.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 702444..713106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS03490 (NQZ84_03490) - 703161..704090 (-) 930 WP_024382739.1 ABC transporter substrate-binding protein -
  NQZ84_RS03495 (NQZ84_03495) - 704103..704888 (-) 786 WP_257048046.1 ABC transporter ATP-binding protein -
  NQZ84_RS03500 (NQZ84_03500) - 705040..706485 (-) 1446 WP_044768732.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  NQZ84_RS03505 (NQZ84_03505) - 706631..707377 (+) 747 WP_014735985.1 lysophospholipid acyltransferase family protein -
  NQZ84_RS03510 (NQZ84_03510) comEA/celA/cilE 707444..708106 (+) 663 WP_044768730.1 helix-hairpin-helix domain-containing protein Machinery gene
  NQZ84_RS03515 (NQZ84_03515) comEC/celB 708090..710327 (+) 2238 WP_257048041.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23481.14 Da        Isoelectric Point: 4.1082

>NTDB_id=614686 NQZ84_RS03510 WP_044768730.1 707444..708106(+) (comEA/celA/cilE) [Streptococcus suis strain 12RC1]
MDTIKTYIEMLKEYKWQIALPAAAGLLMATFLIFSQPAKSDQTGLTDFPQTAQTSSSQEQTEETSTEESEELSQLTVDVK
GAVAKPGLYTLEADARVNDAVEAAGGLTSRADPKSINLAQKLSDEAVVYVASKDENISVVTSTTVSSAMPPEEKSTSLVN
LNTATEADLQTISGIGAKRATDIIAYREANGGFKSVDDLNNVSGIGDKTMESIRPYVTVE

Nucleotide


Download         Length: 663 bp        

>NTDB_id=614686 NQZ84_RS03510 WP_044768730.1 707444..708106(+) (comEA/celA/cilE) [Streptococcus suis strain 12RC1]
ATGGATACGATTAAAACTTATATAGAAATGCTTAAAGAATACAAGTGGCAAATTGCTCTGCCCGCAGCAGCTGGCTTGCT
TATGGCGACGTTCTTAATATTCAGTCAACCAGCCAAGTCTGACCAGACAGGACTGACAGATTTTCCGCAGACTGCACAAA
CTTCTAGCAGTCAAGAACAGACGGAGGAAACCAGTACAGAAGAGAGTGAGGAGCTCAGCCAGCTAACCGTTGATGTCAAA
GGAGCAGTAGCAAAGCCGGGACTCTACACTTTAGAAGCTGATGCGCGTGTTAATGATGCAGTTGAAGCAGCTGGCGGCTT
GACCAGTCGGGCAGACCCCAAGTCTATCAATCTGGCTCAGAAGCTCAGCGATGAGGCGGTGGTCTATGTGGCCAGTAAGG
ACGAAAACATCTCGGTGGTGACTAGCACAACTGTCAGCTCTGCTATGCCCCCAGAAGAAAAAAGCACCAGTCTGGTCAAT
CTGAATACGGCGACCGAGGCGGACCTGCAGACCATTTCTGGTATTGGTGCCAAGCGAGCGACGGACATTATCGCCTATCG
TGAGGCCAACGGTGGATTCAAGTCGGTGGATGACCTCAACAATGTGTCGGGCATCGGTGACAAGACCATGGAAAGCATCC
GACCTTATGTCACGGTTGAGTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(157-218)

SLBB domain (SLBB)

(77-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

47.248

99.091

0.468
  comEA/celA/cilE Streptococcus pneumoniae Rx1

46.818

100

0.468
  comEA/celA/cilE Streptococcus pneumoniae D39

46.818

100

0.468
  comEA/celA/cilE Streptococcus pneumoniae R6

46.818

100

0.468
  comEA/celA/cilE Streptococcus mitis NCTC 12261

46.544

98.636

0.459
  comEA/celA/cilE Streptococcus mitis SK321

45.249

100

0.455
  comEA Streptococcus thermophilus LMD-9

59.494

71.818

0.427
  comEA Lactococcus lactis subsp. cremoris KW2

38.71

98.636

0.382