Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   NQD65_RS02480 Genome accession   NZ_CP101996
Coordinates   427163..427342 (+) Length   59 a.a.
NCBI ID   WP_017647274.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain BCJB1835     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 422163..432342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQD65_RS02445 (NQD65_02450) - 422844..423170 (+) 327 WP_000404432.1 DUF1366 domain-containing protein -
  NQD65_RS02450 (NQD65_02455) - 423145..423357 (+) 213 WP_000698338.1 hypothetical protein -
  NQD65_RS02455 (NQD65_02460) - 423370..423672 (+) 303 WP_000215499.1 hypothetical protein -
  NQD65_RS02460 (NQD65_02465) - 423674..423925 (+) 252 WP_000611525.1 phage holin -
  NQD65_RS02465 (NQD65_02470) - 424055..425398 (+) 1344 WP_000257222.1 GH25 family lysozyme -
  NQD65_RS02470 (NQD65_02475) - 425738..426697 (+) 960 WP_000829578.1 Abi family protein -
  NQD65_RS02475 (NQD65_02480) - 426851..427051 (+) 201 WP_000076696.1 CsbD family protein -
  NQD65_RS02480 (NQD65_02485) prx 427163..427342 (+) 180 WP_017647274.1 hypothetical protein Regulator
  NQD65_RS02485 (NQD65_02490) rimP 427838..428314 (+) 477 WP_041971671.1 ribosome maturation factor RimP -
  NQD65_RS02490 (NQD65_02495) nusA 428350..429501 (+) 1152 WP_000032295.1 transcription termination factor NusA -
  NQD65_RS02495 (NQD65_02500) rnpM 429523..429819 (+) 297 WP_001140526.1 RNase P modulator RnpM -
  NQD65_RS02500 (NQD65_02505) - 429812..430114 (+) 303 WP_001065560.1 YlxQ-related RNA-binding protein -

Sequence

Protein


Download         Length: 59 a.a.        Molecular weight: 6909.98 Da        Isoelectric Point: 4.0881

>NTDB_id=614486 NQD65_RS02480 WP_017647274.1 427163..427342(+) (prx) [Streptococcus agalactiae strain BCJB1835]
MLYIDEFKEAIEKGYISSDTVMVVRKNGKIFDYVLPGEPVRLWEVATEEKVEEVLMELE

Nucleotide


Download         Length: 180 bp        

>NTDB_id=614486 NQD65_RS02480 WP_017647274.1 427163..427342(+) (prx) [Streptococcus agalactiae strain BCJB1835]
ATGTTATATATAGATGAGTTTAAAGAAGCGATTGAAAAAGGATATATCAGCAGTGATACAGTGATGGTTGTGCGTAAGAA
CGGAAAGATATTTGATTATGTGTTACCTGGTGAGCCTGTAAGATTGTGGGAAGTTGCGACAGAGGAAAAAGTGGAAGAAG
TGTTGATGGAATTGGAGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

66.102

100

0.661
  prx Streptococcus pyogenes MGAS8232

67.241

98.305

0.661
  prx Streptococcus pyogenes MGAS315

67.241

98.305

0.661
  prx Streptococcus pyogenes MGAS315

62.712

100

0.627
  prx Streptococcus pyogenes MGAS315

82.927

69.492

0.576
  prx Streptococcus pyogenes MGAS315

73.171

69.492

0.508
  prx Streptococcus pyogenes MGAS315

70.732

69.492

0.492