Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   SAKOR_RS07505 Genome accession   NC_022226
Coordinates   1544509..1545006 (-) Length   165 a.a.
NCBI ID   WP_020978197.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus CN1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1539509..1550006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAKOR_RS07480 (SAKOR_01481) gcvPB 1539671..1541143 (-) 1473 WP_000202188.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  SAKOR_RS07485 (SAKOR_01482) gcvPA 1541136..1542482 (-) 1347 WP_000019681.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SAKOR_RS07490 (SAKOR_01483) gcvT 1542502..1543593 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  SAKOR_RS07495 (SAKOR_01484) - 1543752..1544276 (-) 525 WP_001015121.1 shikimate kinase -
  SAKOR_RS07500 (SAKOR_01485) - 1544266..1544412 (-) 147 WP_001789879.1 hypothetical protein -
  SAKOR_RS07505 (SAKOR_01486) comGF 1544509..1545006 (-) 498 WP_020978197.1 competence type IV pilus minor pilin ComGF Machinery gene
  SAKOR_RS07510 (SAKOR_01487) comGE 1544924..1545223 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  SAKOR_RS07515 (SAKOR_01488) comGD 1545210..1545656 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  SAKOR_RS07520 (SAKOR_01489) comGC 1545634..1545945 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SAKOR_RS07525 (SAKOR_01490) comGB 1545959..1547029 (-) 1071 WP_000776401.1 competence type IV pilus assembly protein ComGB Machinery gene
  SAKOR_RS07530 (SAKOR_01491) comGA 1547001..1547975 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  SAKOR_RS07535 (SAKOR_01492) - 1548027..1548650 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  SAKOR_RS07540 (SAKOR_01493) - 1548647..1548976 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SAKOR_RS07545 (SAKOR_01494) - 1548976..1549962 (-) 987 WP_000161314.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19158.95 Da        Isoelectric Point: 10.1964

>NTDB_id=61413 SAKOR_RS07505 WP_020978197.1 1544509..1545006(-) (comGF) [Staphylococcus aureus subsp. aureus CN1]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISIILLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDKNDIEIRQQRIILQKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=61413 SAKOR_RS07505 WP_020978197.1 1544509..1545006(-) (comGF) [Staphylococcus aureus subsp. aureus CN1]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAATTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAAAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACAGAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Putative Competence protein ComGF (ComGF)

(69-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

98.788

100

0.988
  comGF Staphylococcus aureus MW2

96.364

100

0.964

Multiple sequence alignment