NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	LG401_RS15550	Genome accession	NZ_CP084711
Coordinates	3045859..3046455 (+)	Length	198 a.a.
NCBI ID	WP_034660066.1	Uniprot ID	-
Organism	Bacillus pumilus strain AR03
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3040859..3051455

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LG401_RS15530 (LG401_15530)	nikA	3041176..3042807 (-)	1632	WP_106036497.1	nickel ABC transporter substrate-binding protein	-
LG401_RS15535 (LG401_15535)	-	3042930..3044099 (-)	1170	WP_106036496.1	macrolide family glycosyltransferase	-
LG401_RS15540 (LG401_15540)	-	3044268..3045158 (-)	891	WP_066031724.1	ABC transporter substrate-binding protein	-
LG401_RS15550 (LG401_15550)	clpP	3045859..3046455 (+)	597	WP_034660066.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
LG401_RS15555 (LG401_15555)	-	3046515..3047093 (-)	579	WP_034660067.1	TIGR00730 family Rossman fold protein	-
LG401_RS15560 (LG401_15560)	-	3047230..3047571 (+)	342	WP_034660068.1	MazG nucleotide pyrophosphohydrolase domain-containing protein	-
LG401_RS15565 (LG401_15565)	-	3047600..3049222 (-)	1623	WP_060597350.1	SulP family inorganic anion transporter	-
LG401_RS15570 (LG401_15570)	-	3049260..3049841 (-)	582	WP_060597724.1	carbonic anhydrase	-
LG401_RS15575 (LG401_15575)	-	3050395..3051372 (+)	978	WP_060597351.1	D-glycerate dehydrogenase	-

Sequence

Protein

Download Length: 198 a.a. Molecular weight: 21832.99 Da Isoelectric Point: 4.6141

                                >NTDB_id=612645 LG401_RS15550 WP_034660066.1 3045859..3046455(+) (clpP) [Bacillus pumilus strain AR03]

MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT

MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ

PIEVIERDTDRDNFKTAEEALEYGLIDKVLTRNSEEQK

Nucleotide

Download Length: 597 bp

                                >NTDB_id=612645 LG401_RS15550 WP_034660066.1 3045859..3046455(+) (clpP) [Bacillus pumilus strain AR03]

ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA

CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTGTCACAGCTGCTTTTCTTAGAAGCTG

AAGATCCAGAAAAAGATATTTCTATCTACATTAACAGCCCTGGCGGTTCGATCACAGCTGGTATGGCCATTTACGATACG

ATGCAATTTATTAAACCAAAGGTATCAACCATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG

TGAAAAAGGTAAGCGTTATGCCCTTCCAAACAGTGAAGTCATGATTCACCAACCACTAGGTGGTGCCCAAGGTCAAGCAA

CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAG

CCAATTGAAGTGATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTGAATACGGACTCATTGA

CAAAGTCTTGACCCGTAATTCAGAAGAACAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	92.893	99.495	0.924
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	68.063	96.465	0.657
clpP	Streptococcus thermophilus LMG 18311	59.067	97.475	0.576
clpP	Streptococcus thermophilus LMD-9	59.067	97.475	0.576
clpP	Lactococcus lactis subsp. cremoris KW2	57.216	97.98	0.561
clpP	Streptococcus pneumoniae D39	56.701	97.98	0.556
clpP	Streptococcus pneumoniae Rx1	56.701	97.98	0.556
clpP	Streptococcus pneumoniae R6	56.701	97.98	0.556
clpP	Streptococcus pneumoniae TIGR4	56.701	97.98	0.556
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	55.155	97.98	0.54
clpP	Streptococcus pyogenes JRS4	55.44	97.475	0.54
clpP	Streptococcus pyogenes MGAS315	55.44	97.475	0.54
clpP	Streptococcus mutans UA159	54.639	97.98	0.535

Detailed information NTG0612645