Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LCD43_RS01490 Genome accession   NZ_CP083842
Coordinates   313435..313965 (+) Length   176 a.a.
NCBI ID   WP_023310055.1    Uniprot ID   A0A7W2V7Q4
Organism   Enterobacter asburiae strain 16773-yvys     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 308435..318965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCD43_RS01470 (LCD43_01470) aphA 308759..309472 (+) 714 WP_045355260.1 acid phosphatase AphA -
  LCD43_RS01475 (LCD43_01475) - 309586..310002 (+) 417 WP_023310052.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LCD43_RS01480 (LCD43_01480) - 310005..310358 (+) 354 WP_023310053.1 MmcQ/YjbR family DNA-binding protein -
  LCD43_RS01485 (LCD43_01485) uvrA 310362..313184 (-) 2823 WP_045355262.1 excinuclease ABC subunit UvrA -
  LCD43_RS01490 (LCD43_01490) ssb 313435..313965 (+) 531 WP_023310055.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LCD43_RS01495 (LCD43_01495) - 314028..314309 (-) 282 WP_008503385.1 YjcB family protein -
  LCD43_RS01500 (LCD43_01500) - 314956..316521 (+) 1566 WP_045402478.1 EAL domain-containing protein -
  LCD43_RS01505 (LCD43_01505) soxS 316528..316854 (-) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  LCD43_RS01510 (LCD43_01510) soxR 316953..317411 (+) 459 WP_023310057.1 redox-sensitive transcriptional activator SoxR -
  LCD43_RS01515 (LCD43_01515) - 317705..318376 (+) 672 WP_023310058.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.81 Da        Isoelectric Point: 5.2456

>NTDB_id=608201 LCD43_RS01490 WP_023310055.1 313435..313965(+) (ssb) [Enterobacter asburiae strain 16773-yvys]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=608201 LCD43_RS01490 WP_023310055.1 313435..313965(+) (ssb) [Enterobacter asburiae strain 16773-yvys]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACCACGGAAGTCGTGGTCAACGTGGG
CGGTACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCTGGCGGCGGTCAGAGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCG
GCGCCGTCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2V7Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.778
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364