Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   K9N56_RS21100 Genome accession   NZ_CP083580
Coordinates   4124410..4124982 (-) Length   190 a.a.
NCBI ID   WP_006639372.1    Uniprot ID   M5P203
Organism   Bacillus sp. PM8313     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4119410..4129982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9N56_RS21075 (K9N56_21075) - 4120164..4121462 (+) 1299 WP_006639369.1 hemolysin family protein -
  K9N56_RS21080 (K9N56_21080) - 4121619..4122830 (+) 1212 WP_006639370.1 ammonium transporter -
  K9N56_RS21085 (K9N56_21085) - 4122849..4123199 (+) 351 WP_006639371.1 P-II family nitrogen regulator -
  K9N56_RS24555 - 4123558..4123952 (+) 395 Protein_4128 hypothetical protein -
  K9N56_RS21100 (K9N56_21100) clpP 4124410..4124982 (-) 573 WP_006639372.1 ATP-dependent Clp protease proteolytic subunit Regulator
  K9N56_RS21105 (K9N56_21105) - 4124996..4125604 (-) 609 WP_006639373.1 sigma-70 family RNA polymerase sigma factor -
  K9N56_RS21110 (K9N56_21110) - 4125737..4126609 (-) 873 WP_006639374.1 M23 family metallopeptidase -
  K9N56_RS21115 (K9N56_21115) - 4126812..4127318 (+) 507 WP_029419621.1 GNAT family N-acetyltransferase -
  K9N56_RS21120 (K9N56_21120) - 4127354..4127797 (-) 444 WP_006639376.1 YwnF family protein -
  K9N56_RS21125 (K9N56_21125) cls 4128048..4129496 (+) 1449 WP_029419622.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 21147.37 Da        Isoelectric Point: 5.3555

>NTDB_id=606328 K9N56_RS21100 WP_006639372.1 4124410..4124982(-) (clpP) [Bacillus sp. PM8313]
MNTIPYVIEKTAAGERSYDIFSRLLKDRIIMIGSEFTDDLANRVTAQLLFLSAEDDEKDISIYINSPGGSTSAGYAILDT
MEYVKPDIRTICVGMAASMGAILLAGGTKGKRYALKNSEIMIHQPLGGVKGQATDMEISARRIIKLKEKIQHFFHERTGQ
PLEKLKIDMERDYFMDAGEAKTYGIVDDIL

Nucleotide


Download         Length: 573 bp        

>NTDB_id=606328 K9N56_RS21100 WP_006639372.1 4124410..4124982(-) (clpP) [Bacillus sp. PM8313]
ATGAACACCATTCCGTATGTCATAGAAAAAACAGCGGCGGGAGAAAGGTCTTACGACATTTTTTCAAGGCTCTTGAAAGA
CCGCATCATTATGATCGGCTCGGAATTTACGGACGATCTGGCCAATCGGGTTACCGCCCAATTGCTGTTTTTGTCAGCGG
AGGATGACGAAAAGGATATTTCGATTTATATCAACAGCCCCGGCGGTTCTACGTCAGCCGGATATGCGATTTTAGATACG
ATGGAATATGTGAAACCGGATATCCGCACGATCTGCGTCGGGATGGCGGCGTCAATGGGGGCGATCCTTCTTGCGGGCGG
AACAAAAGGAAAACGGTATGCTCTCAAAAACAGCGAAATCATGATCCATCAGCCGCTCGGCGGCGTCAAAGGCCAGGCGA
CAGACATGGAGATTTCCGCGAGGCGGATCATCAAGCTAAAGGAAAAAATACAGCACTTTTTCCATGAACGGACGGGGCAG
CCGCTTGAAAAACTAAAAATAGACATGGAACGCGACTATTTTATGGATGCCGGGGAAGCGAAGACATACGGCATCGTTGA
TGACATTTTGTGA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5P203

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

64.211

100

0.642
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.428

98.421

0.595
  clpP Streptococcus thermophilus LMG 18311

53.439

99.474

0.532
  clpP Streptococcus thermophilus LMD-9

53.439

99.474

0.532
  clpP Streptococcus pneumoniae D39

52.91

99.474

0.526
  clpP Streptococcus pneumoniae Rx1

52.91

99.474

0.526
  clpP Streptococcus pneumoniae R6

52.91

99.474

0.526
  clpP Streptococcus pneumoniae TIGR4

52.91

99.474

0.526
  clpP Streptococcus mutans UA159

51.852

99.474

0.516
  clpP Streptococcus pyogenes JRS4

51.852

99.474

0.516
  clpP Streptococcus pyogenes MGAS315

51.852

99.474

0.516
  clpP Lactococcus lactis subsp. cremoris KW2

51.323

99.474

0.511
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.265

99.474

0.5