Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NLL86_RS03500 Genome accession   NZ_CP100660
Coordinates   797857..799065 (-) Length   402 a.a.
NCBI ID   WP_254483064.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain ZL22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 792857..804065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLL86_RS03465 (NLL86_03465) - 792922..794217 (-) 1296 WP_254483060.1 NAD(P)/FAD-dependent oxidoreductase -
  NLL86_RS03470 (NLL86_03470) - 794302..794475 (-) 174 WP_008091951.1 DUF3094 domain-containing protein -
  NLL86_RS03475 (NLL86_03475) - 794608..795237 (-) 630 WP_027918232.1 DUF1780 domain-containing protein -
  NLL86_RS03480 (NLL86_03480) - 795324..796031 (+) 708 WP_254483061.1 energy-coupling factor ABC transporter permease -
  NLL86_RS03485 (NLL86_03485) yacG 796168..796368 (-) 201 WP_054886117.1 DNA gyrase inhibitor YacG -
  NLL86_RS03490 (NLL86_03490) coaE 796365..796988 (-) 624 WP_254483062.1 dephospho-CoA kinase -
  NLL86_RS03495 (NLL86_03495) pilD 796988..797854 (-) 867 WP_254483063.1 A24 family peptidase Machinery gene
  NLL86_RS03500 (NLL86_03500) pilC 797857..799065 (-) 1209 WP_254483064.1 type II secretion system F family protein Machinery gene
  NLL86_RS03505 (NLL86_03505) pilA 799281..799691 (+) 411 WP_254483065.1 pilin Machinery gene
  NLL86_RS03515 (NLL86_03515) - 799999..801321 (+) 1323 WP_254483067.1 integrase arm-type DNA-binding domain-containing protein -
  NLL86_RS03520 (NLL86_03520) - 802580..803488 (-) 909 WP_254483069.1 hypothetical protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43510.68 Da        Isoelectric Point: 9.7219

>NTDB_id=606028 NLL86_RS03500 WP_254483064.1 797857..799065(-) (pilC) [Pseudomonas fluorescens strain ZL22]
MNSSTHLYNWRGTDANGAAVSGQVSGRSPAYARAGLQRQGIRVVSLRTAGGFEWRLPKAREKTDPTGFSRQLATLLKAGV
PLLQAFEVMGRSGCTAEQAALLDKLKRDVASGLELADALQRHPAWFDGLYCNLIRVGEQSGTLDRQLEQLAAMLEQRQVL
RKRVRKAMLYPFLLLLTGLGVSAVLLLEVIPRFESLFAGFDAALPAFTQWVIDLSTGLGRFAPLLLITALSLGFGVTRLY
QKHAPARLWITAQALRLPVFGRLLSQAALARFARTLATSYAAGVPLLDALVTVAKACGDDLHEQAVQRLRQGMANGQALN
QAMATEPLFPPLLVQLTAIGESSGTLDQMLDKSASHYEEQVSQTLDQLTSLLEPAIVLILGLLVGGLVVAMYLPIFQLGS
LI

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=606028 NLL86_RS03500 WP_254483064.1 797857..799065(-) (pilC) [Pseudomonas fluorescens strain ZL22]
ATGAACTCATCTACACACCTCTATAACTGGCGCGGCACCGATGCCAACGGCGCTGCGGTCAGCGGCCAGGTCAGCGGGCG
CAGCCCTGCGTATGCGCGGGCCGGCTTGCAGCGCCAGGGCATCCGCGTGGTCAGCCTGCGGACGGCTGGCGGGTTTGAAT
GGCGTTTGCCGAAGGCTCGGGAAAAGACCGATCCGACGGGCTTCAGTCGGCAGCTGGCGACCTTGCTCAAGGCCGGGGTA
CCACTTCTGCAGGCTTTCGAGGTGATGGGGCGTAGCGGCTGCACTGCGGAGCAAGCGGCCTTACTGGATAAATTGAAACG
GGATGTGGCCTCGGGCCTGGAGCTGGCGGATGCGCTACAGCGCCATCCGGCGTGGTTCGATGGGTTGTACTGCAACCTGA
TTCGTGTGGGCGAGCAATCCGGCACGCTCGATCGGCAGCTGGAGCAACTGGCGGCGATGCTGGAACAGCGCCAGGTGCTG
CGTAAACGCGTGCGCAAGGCAATGCTCTACCCGTTCCTACTATTGCTGACCGGGTTGGGCGTTTCGGCGGTGTTGTTGCT
GGAGGTGATTCCGCGTTTCGAGAGCCTGTTTGCCGGTTTCGATGCGGCGCTACCGGCGTTCACGCAGTGGGTGATCGACT
TGTCCACAGGGCTGGGGCGCTTTGCGCCGCTGTTGTTGATAACCGCGCTTAGCCTGGGCTTCGGCGTGACCCGGCTGTAT
CAGAAGCATGCGCCAGCACGCTTGTGGATAACTGCGCAGGCTTTGCGCCTGCCTGTGTTCGGCAGGCTGTTGAGCCAGGC
AGCCCTGGCGCGCTTCGCTCGCACCCTGGCCACATCCTATGCTGCCGGGGTGCCGTTGCTGGATGCGCTGGTCACCGTGG
CCAAGGCCTGCGGTGACGACCTGCACGAGCAGGCGGTGCAGCGCTTGCGCCAGGGAATGGCCAACGGGCAGGCGCTGAAT
CAGGCGATGGCTACTGAACCGCTGTTTCCACCATTGTTGGTGCAACTCACCGCCATCGGTGAATCCAGCGGCACGCTGGA
CCAGATGCTGGATAAGTCCGCCAGCCATTACGAGGAACAGGTCAGCCAGACGCTGGACCAGTTGACCAGCCTGCTGGAGC
CGGCCATCGTGCTGATCCTGGGCTTGCTGGTCGGTGGCCTGGTGGTGGCGATGTACCTGCCGATCTTCCAGTTGGGTAGC
TTGATCTGA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

42.928

100

0.43
  pilC Legionella pneumophila strain ERS1305867

42.5

99.502

0.423
  pilC Pseudomonas stutzeri DSM 10701

41.96

99.005

0.415
  pilC Vibrio cholerae strain A1552

40.404

98.507

0.398
  pilC Acinetobacter baumannii D1279779

39.798

98.756

0.393
  pilC Vibrio campbellii strain DS40M4

39.646

98.507

0.391