Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LAG74_RS20410 Genome accession   NZ_CP083461
Coordinates   4450249..4451763 (+) Length   504 a.a.
NCBI ID   WP_224969112.1    Uniprot ID   -
Organism   Aeromonas veronii strain SW3814     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4445249..4456763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAG74_RS20395 (LAG74_20430) - 4446986..4447930 (-) 945 WP_118880123.1 branched-chain amino acid transaminase -
  LAG74_RS20400 (LAG74_20435) ilvM 4447943..4448221 (-) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  LAG74_RS20405 (LAG74_20440) ilvG 4448218..4449864 (-) 1647 WP_224969111.1 acetolactate synthase 2 catalytic subunit -
  LAG74_RS20410 (LAG74_20445) comM 4450249..4451763 (+) 1515 WP_224969112.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LAG74_RS20415 (LAG74_20450) - 4451890..4452789 (+) 900 WP_224969113.1 acyltransferase -
  LAG74_RS20420 (LAG74_20455) - 4452796..4453761 (+) 966 WP_058056256.1 acyltransferase -
  LAG74_RS20425 (LAG74_20460) - 4453686..4454192 (-) 507 WP_224969114.1 DUF523 domain-containing protein -
  LAG74_RS20430 (LAG74_20465) - 4454189..4454839 (-) 651 WP_005339607.1 DNA mismatch repair protein MutT -
  LAG74_RS20435 (LAG74_20470) - 4454914..4455549 (+) 636 WP_139444385.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54578.49 Da        Isoelectric Point: 7.6884

>NTDB_id=606027 LAG74_RS20410 WP_224969112.1 4450249..4451763(+) (comM) [Aeromonas veronii strain SW3814]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQSAESLPNVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=606027 LAG74_RS20410 WP_224969112.1 4450249..4451763(+) (comM) [Aeromonas veronii strain SW3814]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAAGAGTCGCGGGATCGGGTCCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCTCCCGCCGATCTACCCAAGGAGGGGGGCCGT
TTCGATCTGGCCATCGCCATCGGTATTCTTGCCGCTTCCAAGCAGATACCTGCAAAATATCTGCTCGATCACGAATTTTT
AGGGGAATTGGCCCTGACCGGCGAAATTCGTCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCGGGGC
GCACCCTGCTGGTACCACGAGAGAACGGCCCGGAAGCCTCCCTCATTCAGGATGCCGAAGTGCGCACCGCCCACCAGTTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAGTACGAACTGCCGCTGCCGGATCCCCAAAGCGCGGAGAGCCTGCCCAATGT
GCCGGACCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCGAGCCGATTGCCCGGCATTCTGCCGCCGCTCAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACTCCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACGCCCCACCACAGTGCCTCCGCAGTAGCGCTGGTGGGGGGTGGCAGCCACCCGCGGCCCGGCGAAATATCCCTGGCCC
ACAACGGGGTGCTGTTTCTCGACGAGCTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAATCCCAG
CCCCTGCGGCCACTATGGTGACGGCCAGACCCGCTCCAGCCCGGATCAGATCCTTCGCTACCTCGGCAAACTCTCCGGCC
CCTTTCTCGACCGCTTTGACCTGACGGTGGAGGTGCCACTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCGAGCCAGCAGATCCGCGATCGGGTACTGGCGGCACGGGAGCGCATGCTGAGTCGCAACGGCAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGACTATCACCGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTACGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGACAGGCTGCTGTCGCGATTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Haemophilus influenzae Rd KW20

61.858

100

0.621
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

60.552

100

0.609
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464