Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NKZ80_RS05030 Genome accession   NZ_CP100330
Coordinates   985668..986510 (-) Length   280 a.a.
NCBI ID   WP_024417184.1    Uniprot ID   -
Organism   Streptococcus suis strain STC85     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 980668..991510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKZ80_RS05010 (NKZ80_05010) rplL 980735..981100 (-) 366 WP_002936483.1 50S ribosomal protein L7/L12 -
  NKZ80_RS05015 (NKZ80_05015) rplJ 981166..981660 (-) 495 WP_002936486.1 50S ribosomal protein L10 -
  NKZ80_RS05020 (NKZ80_05020) - 982158..983111 (+) 954 WP_024376800.1 IS30 family transposase -
  NKZ80_RS05025 (NKZ80_05025) topA 983482..985575 (-) 2094 WP_201343695.1 type I DNA topoisomerase -
  NKZ80_RS05030 (NKZ80_05030) dprA 985668..986510 (-) 843 WP_024417184.1 DNA-processing protein DprA Machinery gene
  NKZ80_RS05035 (NKZ80_05035) - 986571..987128 (-) 558 WP_024417183.1 sugar O-acetyltransferase -
  NKZ80_RS05040 (NKZ80_05040) - 987139..987399 (-) 261 WP_009909865.1 metal-sensitive transcriptional regulator -
  NKZ80_RS05045 (NKZ80_05045) - 987506..987829 (+) 324 WP_024417182.1 rhodanese-like domain-containing protein -
  NKZ80_RS05050 (NKZ80_05050) - 987826..989478 (+) 1653 WP_204101680.1 FAD-dependent oxidoreductase -
  NKZ80_RS05055 (NKZ80_05055) - 989586..990137 (+) 552 WP_204101714.1 DUF1836 domain-containing protein -
  NKZ80_RS05060 (NKZ80_05060) - 990127..990777 (+) 651 WP_002936498.1 hemolysin III family protein -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31259.14 Da        Isoelectric Point: 8.4451

>NTDB_id=604221 NKZ80_RS05030 WP_024417184.1 985668..986510(-) (dprA) [Streptococcus suis strain STC85]
MNNFELFKWKKAGLTNLNINKVLAYQEKHGKKLTLRNVAVVSECKNPVLFMENYKNLDIKACREEFNKYPSFSILDDIYP
LALKQIYNPPVLLFYQGDLELLEKSKLAVVGTRNASKNGVQSVQKIIKELNNRFVIVSGLARGIDTAAHIASLKNGGQTI
AVIGTGLDNIYPKENKDLQTYIGKHHLVLTEYEAGAQPLKYHFPERNRIIAGLVEGLVVCEAKMRSGSLITCERALEEGR
EVYAIPGSIMDGKSDGCHHLIQEGAKCVTSGLDIISEYQF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=604221 NKZ80_RS05030 WP_024417184.1 985668..986510(-) (dprA) [Streptococcus suis strain STC85]
ATGAATAATTTTGAATTGTTTAAATGGAAAAAAGCCGGTCTGACAAATCTTAATATTAATAAAGTTTTGGCCTATCAAGA
AAAACACGGTAAAAAATTGACCTTGCGAAATGTCGCTGTAGTGTCTGAATGTAAAAATCCAGTGCTATTTATGGAAAATT
ATAAGAATCTAGATATAAAAGCCTGTCGCGAGGAATTTAATAAGTATCCATCATTTTCAATTTTAGATGACATCTATCCT
TTGGCGCTCAAACAGATTTACAATCCACCTGTACTTTTGTTTTATCAAGGGGATTTAGAATTGCTAGAAAAATCAAAGCT
GGCAGTTGTTGGTACACGAAATGCCAGTAAAAATGGCGTTCAGTCTGTTCAGAAGATTATCAAAGAACTCAACAATCGTT
TTGTCATTGTTAGTGGTTTGGCAAGAGGAATTGATACAGCTGCCCACATCGCCAGTTTGAAAAATGGAGGCCAAACCATT
GCTGTAATCGGAACAGGTTTAGATAATATTTATCCAAAAGAAAATAAGGATTTGCAGACCTATATCGGAAAACACCATTT
GGTGCTGACAGAGTATGAAGCTGGTGCTCAGCCACTCAAATACCATTTTCCAGAACGCAATCGCATTATAGCTGGTTTGG
TGGAAGGATTGGTGGTCTGTGAGGCAAAAATGCGGTCGGGCAGCTTGATTACTTGTGAACGTGCCTTGGAAGAAGGAAGA
GAAGTCTATGCTATTCCAGGTTCCATTATGGACGGAAAATCAGATGGTTGTCATCATCTGATTCAAGAGGGAGCAAAGTG
CGTTACATCAGGCTTGGACATCATTTCTGAGTATCAATTTTAA

Domains

Predicted by InterProScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-60)

DNA recombination-mediator protein A (DNA_processg_A)

(73-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

70.357

100

0.704
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

63.929

100

0.639
  dprA/cilB/dalA Streptococcus pneumoniae D39

63.929

100

0.639
  dprA/cilB/dalA Streptococcus pneumoniae R6

63.929

100

0.639
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

63.929

100

0.639
  dprA/cilB/dalA Streptococcus mitis SK321

63.929

100

0.639
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

63.214

100

0.632
  dprA Lactococcus lactis subsp. cremoris KW2

59.643

100

0.596
  dprA Vibrio campbellii strain DS40M4

35.836

100

0.375
  dprA Legionella pneumophila strain ERS1305867

41.7

88.214

0.368
  dprA Bacillus subtilis subsp. subtilis str. 168

50.746

71.786

0.364
  dprA Latilactobacillus sakei subsp. sakei 23K

40.562

88.929

0.361