Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   K8U58_RS13340 Genome accession   NZ_CP082924
Coordinates   2552242..2552577 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain FJAT-4     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2547242..2557577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8U58_RS13320 (K8U58_13285) gcvT 2547834..2548922 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  K8U58_RS13325 (K8U58_13290) hepAA 2549364..2551037 (+) 1674 WP_004398544.1 DEAD/DEAH box helicase -
  K8U58_RS13330 (K8U58_13295) yqhG 2551058..2551852 (+) 795 WP_003230200.1 YqhG family protein -
  K8U58_RS13335 (K8U58_13300) sinI 2552035..2552208 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  K8U58_RS13340 (K8U58_13305) sinR 2552242..2552577 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  K8U58_RS13345 (K8U58_13310) tasA 2552670..2553455 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  K8U58_RS13350 (K8U58_13315) sipW 2553519..2554091 (-) 573 WP_003246088.1 signal peptidase I SipW -
  K8U58_RS13355 (K8U58_13320) tapA 2554075..2554836 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  K8U58_RS13360 (K8U58_13325) yqzG 2555108..2555434 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  K8U58_RS13365 (K8U58_13330) spoIITA 2555476..2555655 (-) 180 WP_003230176.1 YqzE family protein -
  K8U58_RS13370 (K8U58_13335) comGG 2555726..2556100 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  K8U58_RS13375 (K8U58_13340) comGF 2556101..2556484 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  K8U58_RS13380 (K8U58_13345) comGE 2556510..2556857 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  K8U58_RS13385 (K8U58_13350) comGD 2556841..2557272 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  K8U58_RS13390 (K8U58_13355) comGC 2557262..2557558 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=603586 K8U58_RS13340 WP_003226345.1 2552242..2552577(+) (sinR) [Bacillus subtilis strain FJAT-4]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=603586 K8U58_RS13340 WP_003226345.1 2552242..2552577(+) (sinR) [Bacillus subtilis strain FJAT-4]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1