Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   K7B67_RS14265 Genome accession   NZ_CP082909
Coordinates   3636253..3638334 (-) Length   693 a.a.
NCBI ID   WP_252176559.1    Uniprot ID   -
Organism   Endozoicomonas sp. 4G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3631253..3643334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7B67_RS14255 aroB 3634374..3635465 (-) 1092 WP_252180586.1 3-dehydroquinate synthase -
  K7B67_RS14260 aroK 3635518..3636036 (-) 519 WP_252176558.1 shikimate kinase AroK -
  K7B67_RS14265 pilQ 3636253..3638334 (-) 2082 WP_252176559.1 type IV pilus secretin PilQ family protein Machinery gene
  K7B67_RS14270 - 3638450..3638977 (-) 528 WP_252176560.1 pilus assembly protein PilP -
  K7B67_RS14275 pilO 3638977..3639591 (-) 615 WP_252176561.1 type 4a pilus biogenesis protein PilO -
  K7B67_RS14280 - 3639588..3640154 (-) 567 WP_252176562.1 PilN domain-containing protein -
  K7B67_RS14285 comM 3640154..3641218 (-) 1065 WP_252176563.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 74700.69 Da        Isoelectric Point: 4.7008

>NTDB_id=603439 K7B67_RS14265 WP_252176559.1 3636253..3638334(-) (pilQ) [Endozoicomonas sp. 4G]
MKNKPVLKASTVRVLLYTVLAWLPLSVWGVTLKKMDAGTLPGDIVELRLMFDGPAPEARGYSIEQPPRISLDLPFTRSDL
PKYNEVGFQNAQSVTVLEAGGRTRLVINLKTTASFTTKTDGNVLYVYVGAEGSNPRSVLPTVALSGAPLADPASRGITHI
DFHRGEEGEGNVVITLANPNIPMDINEQGGRIRLEFQGNVLPGRLRNRLDVMDFATPVKFIDARVEDGNGVVIIEPEGEF
SHLAYQTDNTLTVSVKPVSDKDFGRDRKGLSYKGDKLSLNFQDIEVRAVLQLIADFTDLNLVASDTVSGNVTLRLQNVPW
DQALDIVLKSKGLDKRLEGNVLTVAPADEIAARERQQLENDKQIRELAPVYTDLIQINYADAEEIAEVLAGAGEETSLLT
ERGSVQVVARTNSLLVKDTQEKLDELRALIQRLDIPVRQVMIEARIVNMNSDFTRDLGVKWSGATDLASNDSNRSIGIGG
GGTTAGNEGGTPSAGVGNNPFIDFGVTGTNAATLAIGFATNSTILNLELSAILSDGGGETVSQPKVITADKTKAVIKSGK
EIPYEEKTSSGATSVAFKDAVLSLEVTPQITPEGSIIMDVTVTNDSQGADAPNGVPTINKNEVNTQVLVRDGETVVLGGV
FTQEKQKGTVKVPVLGDIPYVGRLFRKDTKSDSKTELMIFITPRVINDNITLR

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=603439 K7B67_RS14265 WP_252176559.1 3636253..3638334(-) (pilQ) [Endozoicomonas sp. 4G]
ATGAAGAATAAGCCCGTGTTGAAAGCCAGCACAGTCCGAGTGCTGTTGTATACGGTGTTGGCGTGGTTGCCGCTTTCTGT
ATGGGGTGTGACGCTCAAAAAAATGGACGCTGGTACCCTGCCGGGTGATATTGTAGAGCTGCGTCTGATGTTCGATGGTC
CTGCACCTGAAGCCAGGGGCTACAGCATAGAACAGCCTCCCAGGATTTCTTTGGATCTGCCATTTACTCGCAGTGATCTG
CCCAAATACAACGAAGTGGGATTTCAGAACGCCCAGAGTGTCACAGTACTTGAGGCCGGAGGCAGAACCCGACTCGTTAT
TAATCTGAAAACAACCGCCAGCTTTACCACCAAAACCGATGGTAATGTGCTTTATGTTTATGTCGGAGCAGAAGGCTCCA
ACCCCCGTTCAGTGCTGCCAACCGTTGCTCTTTCTGGTGCCCCTCTGGCGGATCCTGCCAGTCGGGGCATTACCCATATT
GATTTCCACAGGGGGGAAGAAGGTGAGGGTAATGTGGTCATTACGCTGGCAAACCCTAACATTCCAATGGATATTAATGA
GCAGGGCGGTCGCATTCGACTGGAGTTTCAGGGGAATGTGCTGCCAGGTCGGTTACGTAACCGTCTGGATGTCATGGATT
TTGCTACCCCGGTAAAATTCATCGATGCCAGGGTCGAAGATGGCAATGGGGTGGTGATTATTGAGCCCGAGGGTGAGTTC
AGCCACCTGGCTTATCAGACGGATAACACGTTAACGGTTAGTGTTAAGCCGGTATCCGATAAAGACTTTGGTCGTGACCG
CAAAGGTTTGTCCTACAAGGGGGACAAACTCTCCCTGAACTTTCAGGATATCGAAGTGCGCGCGGTGCTTCAGTTGATTG
CTGACTTTACTGATCTGAACCTGGTCGCTTCCGATACCGTCAGCGGTAACGTAACCCTGCGCCTGCAGAATGTTCCCTGG
GATCAGGCTTTGGATATTGTTCTTAAATCAAAAGGTCTGGACAAGCGCCTTGAAGGCAATGTTCTGACGGTGGCACCAGC
CGATGAAATTGCTGCCAGAGAACGTCAGCAGCTGGAGAATGACAAACAGATTCGTGAGCTGGCACCAGTTTACACGGATC
TGATTCAGATCAATTATGCTGATGCCGAAGAGATAGCGGAGGTGCTTGCCGGAGCGGGTGAAGAAACCAGCCTGCTGACC
GAGCGGGGTTCGGTTCAGGTCGTGGCCCGTACCAACAGCCTCCTGGTTAAGGACACCCAGGAAAAACTGGATGAACTGCG
TGCCCTGATACAGCGTCTTGATATCCCGGTCAGGCAGGTGATGATTGAGGCGCGTATTGTCAATATGAACTCTGACTTTA
CCCGGGACCTGGGGGTGAAGTGGAGCGGCGCAACTGATCTGGCATCCAATGACTCGAATCGGTCTATCGGTATTGGCGGC
GGTGGTACTACCGCAGGGAATGAAGGAGGCACACCTTCAGCCGGAGTGGGTAACAACCCATTTATAGATTTTGGTGTAAC
CGGCACTAATGCCGCTACTCTGGCCATTGGCTTTGCTACTAACAGTACTATTTTGAACCTTGAGTTATCCGCTATTTTAT
CTGACGGGGGTGGTGAAACGGTTTCTCAGCCAAAAGTGATTACTGCCGACAAAACGAAAGCGGTGATCAAGTCCGGTAAG
GAAATCCCGTACGAAGAGAAAACATCCAGCGGTGCCACTTCTGTGGCTTTCAAGGATGCGGTGTTGTCTCTTGAGGTCAC
TCCACAGATCACGCCTGAAGGCAGTATTATCATGGATGTAACGGTTACCAATGACTCTCAGGGGGCTGATGCGCCCAATG
GCGTGCCAACCATTAATAAGAATGAAGTGAATACTCAGGTGCTGGTCAGGGATGGTGAAACGGTTGTTCTGGGCGGAGTC
TTCACTCAGGAGAAGCAAAAAGGCACGGTTAAAGTACCTGTATTGGGTGATATTCCTTACGTAGGTCGACTTTTTAGAAA
AGATACCAAATCAGATAGCAAAACTGAGCTGATGATTTTTATCACCCCCCGGGTCATCAACGATAATATTACCCTCCGTT
AA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(534-686)

Bacterial type II/III secretion system short domain (Secretin_N)

(374-439)

Secretin and TonB N terminus short domain (STN)

(300-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

52.422

100

0.531
  comQ Acinetobacter baylyi ADP1

43.759

98.268

0.43
  pilQ Acinetobacter baumannii strain A118

42.014

100

0.421
  pilQ Acinetobacter baumannii D1279779

41.871

100

0.42
  pilQ Legionella pneumophila strain ERS1305867

38.117

96.537

0.368
  pilQ Legionella pneumophila strain Lp02

37.834

97.258

0.368