Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K7B67_RS14285 Genome accession   NZ_CP082909
Coordinates   3640154..3641218 (-) Length   354 a.a.
NCBI ID   WP_252176563.1    Uniprot ID   -
Organism   Endozoicomonas sp. 4G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3635154..3646218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7B67_RS14260 aroK 3635518..3636036 (-) 519 WP_252176558.1 shikimate kinase AroK -
  K7B67_RS14265 pilQ 3636253..3638334 (-) 2082 WP_252176559.1 type IV pilus secretin PilQ family protein Machinery gene
  K7B67_RS14270 - 3638450..3638977 (-) 528 WP_252176560.1 pilus assembly protein PilP -
  K7B67_RS14275 pilO 3638977..3639591 (-) 615 WP_252176561.1 type 4a pilus biogenesis protein PilO -
  K7B67_RS14280 - 3639588..3640154 (-) 567 WP_252176562.1 PilN domain-containing protein -
  K7B67_RS14285 comM 3640154..3641218 (-) 1065 WP_252176563.1 pilus assembly protein PilM Machinery gene
  K7B67_RS14290 - 3641735..3644194 (+) 2460 WP_252176564.1 penicillin-binding protein 1A -
  K7B67_RS14295 - 3644283..3645533 (-) 1251 WP_252176565.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38180.11 Da        Isoelectric Point: 4.2791

>NTDB_id=603440 K7B67_RS14285 WP_252176563.1 3640154..3641218(-) (comM) [Endozoicomonas sp. 4G]
MFGLFNNKTSAVLGVDISSTSVKVLELSRGGRGYRVEAYWQEPLPPGAVVENIIQEPEAVGEAIKRAVSRSRSGVKNAAV
AVSGSAVITKTIEMDASLSDDEMETQITVEADQYIPYALDEVAIDFEVLGLKENNPERAEVLLAACRRDNVEIREEALGL
GGLKAKVVDVEAFAMERVYELVGDTLELPEEEAVVAIVDMGASSTSISVLRNGQTIYTREQLFGGRQLTDEIQRRYGLSP
EEAEKSKHDGGLPDDFEPEVLEPFKEAVVQQISRSLRFFYSSSQYNDVDAILMAGGTSSISGLAALVQDKLGTPAFLANP
FASMSVSRKVDASKLTASAPGLVIACGLAMRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=603440 K7B67_RS14285 WP_252176563.1 3640154..3641218(-) (comM) [Endozoicomonas sp. 4G]
GTGTTTGGGCTTTTCAATAATAAAACAAGTGCTGTCCTTGGAGTGGACATCAGTTCGACCTCAGTGAAGGTACTCGAACT
GAGTCGTGGTGGCAGGGGCTACCGGGTTGAAGCCTACTGGCAGGAACCTTTGCCACCCGGGGCTGTGGTGGAAAATATTA
TCCAGGAACCTGAAGCGGTTGGCGAGGCTATCAAGCGCGCTGTTTCCCGCAGTCGCAGCGGCGTGAAAAATGCTGCGGTG
GCTGTTTCCGGTTCGGCTGTCATCACCAAAACCATCGAGATGGATGCTTCCCTCAGTGATGATGAGATGGAAACACAAAT
TACCGTAGAAGCCGATCAGTATATTCCATACGCATTAGATGAAGTGGCGATTGATTTTGAAGTCCTTGGCTTAAAGGAAA
ATAATCCTGAGCGGGCAGAGGTACTGCTTGCCGCCTGCCGTCGCGATAATGTTGAAATACGTGAAGAGGCGCTTGGGCTT
GGCGGTCTGAAAGCCAAAGTGGTGGATGTCGAGGCATTTGCCATGGAAAGGGTCTACGAGTTGGTAGGTGATACGCTGGA
GTTGCCAGAAGAGGAAGCGGTGGTGGCCATTGTTGATATGGGAGCCAGCAGCACTTCCATTAGTGTGTTGAGAAATGGGC
AGACGATCTACACACGGGAACAATTGTTTGGCGGCCGGCAGCTCACCGATGAGATTCAGCGCCGCTACGGTCTCAGCCCT
GAAGAAGCAGAGAAGTCCAAACACGACGGGGGACTTCCAGACGATTTTGAACCTGAGGTACTGGAGCCTTTCAAAGAGGC
GGTTGTGCAACAGATTTCCCGATCCCTCCGGTTTTTCTATTCTTCCAGTCAATACAACGATGTTGATGCCATTCTGATGG
CTGGCGGAACCTCTTCCATTTCAGGCCTTGCTGCCCTGGTTCAGGATAAGCTGGGAACACCGGCATTTCTGGCTAATCCG
TTTGCCAGCATGTCCGTTTCCAGAAAAGTGGATGCCAGTAAATTAACTGCCAGCGCTCCGGGTCTGGTCATCGCCTGTGG
ATTAGCCATGAGGAGTTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

53.955

100

0.54
  pilM Acinetobacter baumannii D1279779

53.672

100

0.537
  comM Acinetobacter baylyi ADP1

51.977

100

0.52
  pilM Legionella pneumophila strain ERS1305867

43.503

100

0.435