Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K7B67_RS05210 Genome accession   NZ_CP082909
Coordinates   1412288..1413505 (-) Length   405 a.a.
NCBI ID   WP_252179309.1    Uniprot ID   -
Organism   Endozoicomonas sp. 4G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1407288..1418505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7B67_RS05190 - 1408248..1409711 (-) 1464 WP_252179305.1 hypothetical protein -
  K7B67_RS05195 - 1409811..1411205 (-) 1395 WP_252179306.1 hypothetical protein -
  K7B67_RS05200 - 1411481..1411762 (-) 282 WP_252179307.1 addiction module antidote protein -
  K7B67_RS05205 - 1411766..1412065 (-) 300 WP_252179308.1 type II toxin-antitoxin system RelE/ParE family toxin -
  K7B67_RS05210 pilC 1412288..1413505 (-) 1218 WP_252179309.1 type II secretion system F family protein Machinery gene
  K7B67_RS05215 - 1413585..1414391 (-) 807 WP_252179310.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase -
  K7B67_RS05220 rsmA 1414425..1415231 (-) 807 WP_252179311.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  K7B67_RS05225 pdxA 1415320..1416306 (-) 987 WP_252179312.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA -
  K7B67_RS05230 - 1416436..1417725 (-) 1290 WP_252180529.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43852.55 Da        Isoelectric Point: 9.8156

>NTDB_id=603427 K7B67_RS05210 WP_252179309.1 1412288..1413505(-) (pilC) [Endozoicomonas sp. 4G]
MARKKTKTATFVWEGKDKSGRKTKGELQSSSIALVKAELRKQGINSTKVRKKGMSLGTKGGKIKPMDIALFTRQLATMMK
AGVPLLQAFDITSDGIEKPAMKDLIGKIKTDVAGGSTLADALRSHRLYFDDLYCNLVASGEQSGSLESLLDRIATYKEKT
EALKAKIKKAMKYPIAVVAVAMIVTGILLIYVVPQFEEVFQGFGAELPAFTQLVIGISEAVQSSWHIAIAALIVFGFIFK
KLLQKSKATRDRMDRITLKIPVLGEILDKSAVARFARTLSTTFAAGVPLVDALESVAGASGNIVYFDATQQIKEDVSSGQ
QLQFAMRNSGIFPAMAIQMVAIGEESGSLDEMLNKVATFYEDEVDNMVDGLTSLMEPMIMSVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=603427 K7B67_RS05210 WP_252179309.1 1412288..1413505(-) (pilC) [Endozoicomonas sp. 4G]
ATGGCACGCAAAAAAACAAAAACAGCCACGTTTGTCTGGGAAGGAAAAGACAAGAGTGGCAGGAAGACCAAGGGAGAACT
CCAAAGTAGCAGTATTGCCCTGGTCAAGGCCGAACTTCGTAAACAGGGAATCAACTCAACAAAAGTCAGAAAAAAGGGTA
TGTCGCTGGGCACCAAAGGCGGCAAAATCAAGCCCATGGACATTGCCCTGTTTACCCGCCAGCTAGCCACCATGATGAAA
GCGGGTGTCCCCTTGCTCCAGGCTTTTGATATCACTTCTGACGGTATCGAAAAGCCTGCCATGAAAGACCTCATTGGCAA
AATCAAGACGGATGTCGCCGGTGGTTCCACTCTGGCTGACGCCTTGAGAAGCCATCGACTTTATTTTGATGACCTCTATT
GCAACCTCGTTGCTTCCGGTGAGCAGTCAGGTTCACTGGAGTCACTTCTGGACAGAATTGCCACCTATAAAGAAAAAACG
GAAGCCCTCAAGGCAAAAATCAAAAAAGCGATGAAATATCCCATTGCGGTTGTCGCTGTTGCCATGATCGTAACCGGCAT
TCTACTGATCTATGTAGTGCCTCAGTTCGAGGAGGTATTCCAGGGATTTGGCGCTGAACTGCCCGCGTTTACCCAGCTGG
TTATCGGTATTTCTGAAGCAGTTCAGAGTTCATGGCATATAGCAATAGCCGCGCTTATTGTCTTTGGATTTATATTCAAA
AAACTGTTACAGAAGTCCAAAGCCACCAGAGACAGAATGGATCGAATCACTCTTAAGATCCCGGTGCTCGGTGAAATTCT
TGATAAATCAGCGGTAGCCCGGTTCGCCAGAACCCTGTCGACGACCTTTGCCGCCGGTGTTCCCCTGGTGGATGCCCTTG
AATCGGTGGCTGGGGCTTCAGGTAATATCGTCTATTTCGATGCCACCCAGCAGATTAAGGAAGACGTATCCAGCGGTCAG
CAGCTGCAATTTGCCATGAGAAATTCTGGCATCTTCCCGGCCATGGCCATCCAGATGGTAGCCATTGGTGAAGAATCCGG
TTCTCTGGATGAAATGCTCAACAAAGTCGCCACCTTTTATGAGGACGAAGTCGATAACATGGTGGATGGCCTGACCAGCT
TGATGGAACCTATGATCATGTCGGTTCTTGGGGTATTGGTCGGTGGTCTTATTATTGCTATGTACCTGCCTATCTTTCAG
TTGGGGTCTGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

69.63

100

0.696
  pilC Acinetobacter baylyi ADP1

58.537

100

0.593
  pilC Acinetobacter baumannii D1279779

57.843

100

0.583
  pilC Legionella pneumophila strain ERS1305867

56.618

100

0.57
  pilG Neisseria meningitidis 44/76-A

46.04

99.753

0.459
  pilG Neisseria gonorrhoeae MS11

46.02

99.259

0.457
  pilC Vibrio cholerae strain A1552

44.361

98.519

0.437
  pilC Vibrio campbellii strain DS40M4

43.719

98.272

0.43