Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   K8P00_RS01665 Genome accession   NZ_CP082861
Coordinates   329769..331004 (-) Length   411 a.a.
NCBI ID   WP_003823524.1    Uniprot ID   A0A8B4GNL1
Organism   Eikenella corrodens strain FDAARGOS_1474     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 324769..336004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8P00_RS01640 (K8P00_01630) rlmD 325911..327203 (-) 1293 WP_003823529.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  K8P00_RS01645 (K8P00_01635) yacG 327271..327453 (-) 183 WP_003823528.1 DNA gyrase inhibitor YacG -
  K8P00_RS01650 (K8P00_01640) zapD 327450..328226 (-) 777 WP_003823527.1 cell division protein ZapD -
  K8P00_RS01655 (K8P00_01645) coaE 328230..328835 (-) 606 WP_003823526.1 dephospho-CoA kinase -
  K8P00_RS01660 (K8P00_01650) pilD 328837..329694 (-) 858 WP_003823525.1 A24 family peptidase Machinery gene
  K8P00_RS01665 (K8P00_01655) pilG 329769..331004 (-) 1236 WP_003823524.1 type II secretion system F family protein Machinery gene
  K8P00_RS01670 (K8P00_01660) pilF 331036..332712 (-) 1677 WP_003823522.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K8P00_RS01675 (K8P00_01665) recJ 332958..334655 (-) 1698 WP_003823521.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45288.31 Da        Isoelectric Point: 9.6151

>NTDB_id=603197 K8P00_RS01665 WP_003823524.1 329769..331004(-) (pilG) [Eikenella corrodens strain FDAARGOS_1474]
MAINKRTQSNKKVAGVSYEFEGRHMESEQIVRGEVVAKDEQDARAKLARRRVKVISLHKKKKVREKRITQGDITVFTRQL
ATMMKAGLPVMQAFDIVAKGHSNASMTKLLMEVRNDIEQGTSMANAFRKHPKYFDDFYCNLVDAGEAGGVLESLLDKLAV
YKEKTLAIKKKIKSALTYPIAVVVVAIVLVIIMMMFVLPEFKKVYDGMNAEMPALTQFMMGISDFMVAWGWMVIIAMVAA
VAGFIQWHKRSPALQKRVDAMLLKLPIFGNIVEKGTIARWARTTATLFTAGVPLVEALDSVGGASGNIIYEEATRSIRNQ
VNQGTSLTTAMSSTDLFPNMVLQMASIGEESGSLDDMLNKAAEFYEEEVDTAVATLSSLMEPIIMVVLGSIIGVILVAMY
LPLFNLGNAIG

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=603197 K8P00_RS01665 WP_003823524.1 329769..331004(-) (pilG) [Eikenella corrodens strain FDAARGOS_1474]
ATGGCTATAAACAAAAGAACCCAATCCAATAAAAAAGTGGCAGGAGTCAGCTACGAATTTGAAGGCCGGCACATGGAGTC
TGAGCAAATCGTCCGTGGCGAAGTAGTCGCCAAAGACGAACAGGACGCCCGTGCCAAACTCGCCCGTCGTCGTGTCAAGG
TTATTAGCCTGCACAAGAAAAAGAAAGTTCGCGAAAAGAGAATTACCCAGGGCGACATTACTGTATTTACCCGCCAGCTA
GCCACCATGATGAAAGCCGGTCTGCCGGTAATGCAGGCATTTGATATTGTAGCAAAAGGCCACTCTAATGCCTCCATGAC
CAAGCTCTTGATGGAAGTGCGTAACGACATCGAGCAGGGTACTTCTATGGCCAATGCCTTCCGCAAACACCCAAAATATT
TTGATGATTTCTATTGTAACCTGGTGGATGCTGGTGAGGCAGGTGGTGTACTGGAAAGTTTACTCGACAAACTGGCTGTA
TATAAAGAGAAAACCCTTGCTATTAAGAAGAAAATTAAAAGTGCATTAACCTATCCGATTGCCGTGGTAGTAGTAGCCAT
TGTTTTGGTCATCATCATGATGATGTTTGTGCTACCTGAGTTTAAAAAAGTGTATGACGGCATGAATGCAGAAATGCCTG
CACTTACTCAATTTATGATGGGTATCTCTGACTTTATGGTGGCATGGGGATGGATGGTTATTATTGCAATGGTAGCTGCT
GTTGCTGGCTTTATCCAATGGCATAAACGTTCACCTGCACTGCAAAAACGAGTAGATGCTATGCTGTTGAAATTGCCTAT
CTTTGGTAATATCGTAGAAAAAGGTACGATTGCCCGCTGGGCTCGCACCACTGCCACCCTATTTACCGCTGGTGTGCCAC
TGGTGGAAGCGCTAGACTCCGTAGGTGGCGCATCAGGCAATATCATTTATGAAGAAGCCACCAGAAGCATTCGAAACCAA
GTCAACCAAGGTACTTCTTTAACCACTGCAATGAGCTCTACTGACCTATTCCCCAACATGGTCTTGCAGATGGCCTCTAT
CGGTGAGGAATCAGGCTCTTTGGATGACATGCTGAATAAGGCGGCAGAATTTTATGAAGAAGAAGTAGATACTGCTGTAG
CTACTCTATCATCTCTAATGGAACCAATCATTATGGTAGTATTAGGCAGTATCATTGGTGTCATCTTGGTTGCCATGTAT
CTGCCGCTGTTCAACTTAGGTAATGCTATCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B4GNL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

65.473

95.134

0.623
  pilG Neisseria meningitidis 44/76-A

64.962

95.134

0.618
  pilC Legionella pneumophila strain ERS1305867

47.87

97.08

0.465
  pilC Pseudomonas stutzeri DSM 10701

44.743

99.513

0.445
  pilC Acinetobacter baumannii D1279779

44.862

97.08

0.436
  pilC Acinetobacter baylyi ADP1

44.675

93.674

0.418
  pilC Vibrio cholerae strain A1552

38.095

97.08

0.37
  pilC Vibrio campbellii strain DS40M4

37.5

97.324

0.365