NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	K6959_RS14510	Genome accession	NZ_CP082780
Coordinates	2978334..2978930 (+)	Length	198 a.a.
NCBI ID	WP_163242227.1	Uniprot ID	-
Organism	Bacillus aquiflavi strain 3H-10
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2973334..2983930

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6959_RS14485 (K6959_14485)	-	2974045..2974590 (-)	546	WP_223086841.1	hypothetical protein	-
K6959_RS14490 (K6959_14490)	-	2975087..2976201 (+)	1115	Protein_2924	IS4 family transposase	-
K6959_RS19915	-	2976807..2976890 (+)	84	WP_394373042.1	hypothetical protein	-
K6959_RS14500 (K6959_14500)	-	2977403..2977582 (-)	180	Protein_2926	dihydrofolate reductase	-
K6959_RS14510 (K6959_14510)	clpP	2978334..2978930 (+)	597	WP_163242227.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
K6959_RS14515 (K6959_14515)	-	2979446..2979703 (-)	258	WP_163242226.1	HPr family phosphocarrier protein	-
K6959_RS14520 (K6959_14520)	whiA	2979728..2980679 (-)	952	Protein_2929	DNA-binding protein WhiA	-
K6959_RS14525 (K6959_14525)	yvcK	2980803..2981786 (-)	984	WP_223086843.1	YvcK family protein	-
K6959_RS14530 (K6959_14530)	rapZ	2981783..2982676 (-)	894	WP_163242223.1	RNase adapter RapZ	-
K6959_RS14535 (K6959_14535)	-	2982689..2983147 (-)	459	WP_163242222.1	8-oxo-dGTP diphosphatase	-

Sequence

Protein

Download Length: 198 a.a. Molecular weight: 21904.31 Da Isoelectric Point: 5.7306

                                >NTDB_id=602155 K6959_RS14510 WP_163242227.1 2978334..2978930(+) (clpP) [Bacillus aquiflavi strain 3H-10]

MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDQVANSIVAQLLFLEAENPEKDISIYINSPGGSITAGMAIFDT

MQFIKPNIQTICIGIAASMGAFLLAAGTKGKRYCLPNSEVMIHQPLGGAQGQATEIEIAAKRILFLRDKLNHILAERTGQ

PLEVIQRDTDRDNFMTAEKALEYGLIDHIISRNSLDKK

Nucleotide

Download Length: 597 bp

                                >NTDB_id=602155 K6959_RS14510 WP_163242227.1 2978334..2978930(+) (clpP) [Bacillus aquiflavi strain 3H-10]

ATGAATTTAATCCCTACTGTTATTGAACAAACAAATCGAGGAGAACGTGCATACGATATTTATTCTCGTCTGTTAAAAGA

CCGGATTATTATGCTAGGCAGTGCAATAGACGATCAGGTTGCAAATTCAATTGTCGCTCAATTATTATTTTTAGAAGCAG

AAAACCCTGAAAAAGACATATCTATTTACATTAATAGCCCAGGAGGAAGTATTACTGCTGGGATGGCTATTTTTGATACA

ATGCAATTTATTAAACCAAACATTCAAACAATTTGTATTGGAATAGCTGCTTCAATGGGAGCATTCTTATTAGCAGCAGG

AACAAAAGGCAAACGTTATTGTTTACCTAACAGTGAAGTGATGATTCATCAACCGCTTGGCGGAGCGCAAGGGCAAGCAA

CTGAAATTGAAATTGCCGCAAAGCGAATTCTGTTTTTACGAGACAAACTTAACCATATTCTTGCAGAGCGTACAGGACAA

CCGCTTGAAGTCATTCAACGAGATACAGATCGAGACAACTTTATGACAGCTGAAAAAGCGCTTGAATACGGTTTAATCGA

CCATATTATTTCCCGAAATTCATTAGATAAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	86.364	100	0.864
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	65.445	96.465	0.631
clpP	Lactococcus lactis subsp. cremoris KW2	58.462	98.485	0.576
clpP	Streptococcus thermophilus LMG 18311	57.949	98.485	0.571
clpP	Streptococcus thermophilus LMD-9	57.949	98.485	0.571
clpP	Streptococcus pneumoniae D39	56.633	98.99	0.561
clpP	Streptococcus pneumoniae Rx1	56.633	98.99	0.561
clpP	Streptococcus pneumoniae R6	56.633	98.99	0.561
clpP	Streptococcus pneumoniae TIGR4	56.633	98.99	0.561
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	56.41	98.485	0.556
clpP	Streptococcus pyogenes JRS4	55.385	98.485	0.545
clpP	Streptococcus pyogenes MGAS315	55.385	98.485	0.545
clpP	Streptococcus mutans UA159	55.102	98.99	0.545

Detailed information NTG0602155