Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   LPT17_RS05995 Genome accession   NZ_CP099502
Coordinates   1212947..1214728 (-) Length   593 a.a.
NCBI ID   WP_000983670.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JL42     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1207947..1219728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPT17_RS05975 (LPT17_05975) - 1208243..1208785 (-) 543 WP_000197271.1 5'-3'-deoxyribonucleotidase -
  LPT17_RS05980 (LPT17_05980) hisC 1208944..1210002 (-) 1059 WP_000663034.1 histidinol-phosphate transaminase -
  LPT17_RS05985 (LPT17_05985) - 1210242..1211756 (-) 1515 WP_000180989.1 ABC transporter permease/substrate-binding protein -
  LPT17_RS05990 (LPT17_05990) - 1211749..1212726 (-) 978 WP_000589252.1 ABC transporter ATP-binding protein -
  LPT17_RS05995 (LPT17_05995) recQ 1212947..1214728 (-) 1782 WP_000983670.1 DNA helicase RecQ Machinery gene
  LPT17_RS06000 (LPT17_06000) - 1214740..1216623 (-) 1884 WP_229353440.1 ABC-F family ATP-binding cassette domain-containing protein -
  LPT17_RS06005 (LPT17_06005) ltaS 1216894..1218834 (-) 1941 WP_000098285.1 polyglycerol-phosphate lipoteichoic acid synthase LtaS -

Sequence

Protein


Download         Length: 593 a.a.        Molecular weight: 68124.03 Da        Isoelectric Point: 6.8094

>NTDB_id=601835 LPT17_RS05995 WP_000983670.1 1212947..1214728(-) (recQ) [Staphylococcus aureus strain JL42]
MMQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKDQVDQLKAMGIQ
AAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNLLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFT
LPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFVLDYIKTHDEDAGIIYCSTRKQVE
ELQEALESQKIDSVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRD
GLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDK
SYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEI
LMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRVLFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPAS
KQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV

Nucleotide


Download         Length: 1782 bp        

>NTDB_id=601835 LPT17_RS05995 WP_000983670.1 1212947..1214728(-) (recQ) [Staphylococcus aureus strain JL42]
ATGATGCAACAAACATTATCGCATTACTTTGGGTATGAAACGTTTCGACCAGGACAAGAAGAGATTATTAGCAAAGTATT
AGACCATCGTAATGTGCTTGGTGTCTTACCAACTGGTGGAGGTAAGTCTATATGCTATCAAGTACCAGGTTTATTGTTAG
GTGGTACAACAATTGTAATAAGTCCACTAATATCATTAATGAAAGATCAAGTGGATCAATTAAAAGCGATGGGAATTCAA
GCTGCTTTTTTAAATAGTAGTTTGACTCAAAAAGAGCAACAACGTATTGAAAAAGCATTATCAAATGGAGAAATTCAATT
TTTATATGTTGCACCAGAACGATTTGAAAATCGATATTTTTTAAATTTGCTTCAACGTATCAAGATTCATTTAGTGGCGT
TTGATGAAGCACATTGTATTTCAAAATGGGGTCATGATTTCAGACCGAGTTACCAAAACGTCATTTCTAAAGTATTTACG
TTACCTCAAGATTTTACAATAATAGCGTTGACAGCAACTGCAACAGTTGAAGTACAGCAAGATATTAGAGAAAAGTTAAA
TATCGCTCAAACTGATCAAATTAAAACGAGTACTAAGCGTAGAAACTTAATTTTTAAAGTAAATCCTACTTATCAACGGC
AAAAATTTGTATTAGATTATATTAAAACACACGATGAAGATGCAGGTATTATTTATTGTTCTACACGTAAGCAAGTTGAA
GAGCTTCAAGAAGCCTTAGAAAGCCAGAAAATTGATAGTGTTATATATCATGCAGGTTTGAGCAATAAAGAAAGAGAAGA
AGCGCAGAATGACTTCTTATTTGATCGTGTTAAAGTAGTCGTTGCTACAAATGCTTTTGGTATGGGTATTGATAAATCTA
ATGTACGTTTTGTTATTCATTATAATATGCCTGGAGATTTAGAATCTTATTATCAAGAAGCGGGACGTGCAGGTCGTGAC
GGATTGAAAAGTGAATGTATTTTGTTATTTAGCGAACGCGATATCAATTTACACGAGTATTTTATAACAGTCTCTCAAGC
TGATGATGACTATAAAGATAAAATGGGCGAAAAGTTAACTAAAATGATTCAATATACAAAAACAAAAAAATGTTTAGAAG
CAACAATTGTCCATTATTTTGAACCGAATGAAAAATTAGAAGAATGTGAACAATGTAGTAATTGTGTTCAACAAGATAAA
TCATATAATATGACACAAGAAGCTAAGATGATTATTAGTTGCATCGCTCGTATGAAACAACAAGAGAGTTATAGTGTTAT
CATTCAAGTATTAAGAGGAGAGTCAACAGATTATATTAAGTATAAAGGTTATGATCAAATTTCAACCCATGGTTTAATGA
AAGGTTACACTACATCAGAATTAAGTCACTTAATAGATGAATTAAGATTCAAAGGGTTCTTAAATGAAAATGATGAAATA
TTAATGTGTGATACTTCAATTAAAAAATTACTCAGTAATGAAGTAGAAGTATTCACAACACCATTTAAGCAAAAAGCGAC
TGAAAAAGTATTTATAAATACGGTTGAAGGGGTTGACCGAGTATTATTCAGTCAGTTGGTAGAAGTTCGTAAAAAGTTAA
GTGACAAATTAACGATAGCACCTGTAAGTATATTTTCTGATTACACGTTGGAGGAATTTGCTAAACGTAAGCCTGCTTCG
AAACAAGATATGATTAATATTGATGGCGTAGGTAGTTACAAATTAAAACATTATTGTCCAGCATTTTTAGAAACGATTCA
AAATTATAAAGCCAAAGTATAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(17-178)

RecQ zinc-binding (RecQ_Zn_bind)

(333-395)

RQC domain (RQC)

(400-500)

HRDC domain (HRDC)

(521-586)

Helicase conserved C-terminal domain (Helicase_C)

(218-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

42.373

99.494

0.422