NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	K7T73_RS17130	Genome accession	NZ_CP082363
Coordinates	3272849..3273445 (+)	Length	198 a.a.
NCBI ID	WP_041094823.1	Uniprot ID	-
Organism	Bacillus badius strain NBPM-293
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3267849..3278445

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K7T73_RS17105 (K7T73_17080)	gap	3268305..3269312 (-)	1008	WP_063384766.1	type I glyceraldehyde-3-phosphate dehydrogenase	-
K7T73_RS17110 (K7T73_17085)	-	3269380..3270408 (-)	1029	WP_063384765.1	sugar-binding transcriptional regulator	-
K7T73_RS17115 (K7T73_17090)	-	3270573..3270809 (-)	237	WP_063384764.1	glutaredoxin family protein	-
K7T73_RS17120 (K7T73_17095)	rpoN	3270828..3272156 (-)	1329	WP_041094821.1	RNA polymerase factor sigma-54	-
K7T73_RS17130 (K7T73_17105)	clpP	3272849..3273445 (+)	597	WP_041094823.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
K7T73_RS17135 (K7T73_17110)	-	3273574..3273837 (-)	264	WP_041094825.1	HPr family phosphocarrier protein	-
K7T73_RS17140 (K7T73_17115)	whiA	3273855..3274802 (-)	948	WP_041094827.1	DNA-binding protein WhiA	-
K7T73_RS17145 (K7T73_17120)	-	3274822..3275787 (-)	966	WP_063384763.1	YvcK family protein	-
K7T73_RS17150 (K7T73_17125)	rapZ	3275784..3276677 (-)	894	WP_041094831.1	RNase adapter RapZ	-
K7T73_RS17155 (K7T73_17130)	-	3276732..3277190 (-)	459	WP_041094833.1	NUDIX domain-containing protein	-

Sequence

Protein

Download Length: 198 a.a. Molecular weight: 21753.08 Da Isoelectric Point: 4.8818

                                >NTDB_id=601835 K7T73_RS17130 WP_041094823.1 3272849..3273445(+) (clpP) [Bacillus badius strain NBPM-293]

MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSGIDDNVANSIVSQLLFLEAENPEKDISIYINSPGGSITAGMAIYDT

IQFIKPDVQTICIGMAASMGAFLLAAGAKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLRDKLNQILAERTGQ

PLEVIARDTDRDNFMTAERALEYGLIDKILTRNELPGK

Nucleotide

Download Length: 597 bp

                                >NTDB_id=601835 K7T73_RS17130 WP_041094823.1 3272849..3273445(+) (clpP) [Bacillus badius strain NBPM-293]

ATGAATTTAATTCCTACAGTTATTGAACAAACAAACCGCGGAGAGCGCGCGTATGACATCTATTCTCGCTTGCTGAAAGA

CCGTATTATCATGCTTGGCAGCGGAATTGATGACAATGTTGCCAACTCAATTGTTTCTCAGCTATTGTTCCTTGAAGCTG

AAAACCCGGAAAAAGACATTTCCATTTACATTAACAGCCCAGGCGGCAGCATTACTGCCGGCATGGCGATCTATGACACA

ATCCAATTTATTAAACCGGATGTACAAACCATTTGTATCGGTATGGCTGCCTCTATGGGAGCATTCCTGTTGGCAGCCGG

CGCAAAAGGCAAGCGTTATGCCCTTCCTAACAGTGAAGTCATGATCCATCAACCGCTTGGAGGCGCACAAGGACAGGCGA

CAGAAATTGAAATCGCCGCTAAGCGCATTCTCTTCCTGCGTGATAAACTAAACCAAATCCTAGCAGAGCGCACAGGCCAG

CCGCTTGAAGTCATTGCCCGTGATACTGACCGCGATAACTTTATGACAGCGGAACGCGCACTTGAGTACGGCTTGATCGA

CAAGATCTTAACACGCAACGAACTGCCTGGTAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	90.722	97.98	0.889
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	68.586	96.465	0.662
clpP	Streptococcus thermophilus LMG 18311	59.487	98.485	0.586
clpP	Streptococcus thermophilus LMD-9	59.487	98.485	0.586
clpP	Lactococcus lactis subsp. cremoris KW2	58.462	98.485	0.576
clpP	Streptococcus pneumoniae D39	57.949	98.485	0.571
clpP	Streptococcus pneumoniae Rx1	57.949	98.485	0.571
clpP	Streptococcus pneumoniae R6	57.949	98.485	0.571
clpP	Streptococcus pneumoniae TIGR4	57.949	98.485	0.571
clpP	Streptococcus pyogenes JRS4	56.41	98.485	0.556
clpP	Streptococcus pyogenes MGAS315	56.41	98.485	0.556
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	56.41	98.485	0.556
clpP	Streptococcus mutans UA159	56.122	98.99	0.556

Detailed information NTG0601835