Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   K6748_RS01575 Genome accession   NZ_CP082307
Coordinates   334619..335134 (+) Length   171 a.a.
NCBI ID   WP_205461596.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain HNV2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 329619..340134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6748_RS01555 (K6748_01555) - 329762..332323 (-) 2562 WP_206958471.1 PBP1A family penicillin-binding protein -
  K6748_RS01560 (K6748_01560) pilM 332468..333484 (+) 1017 WP_005381324.1 type IV pilus assembly protein PilM Machinery gene
  K6748_RS01565 (K6748_01565) pilN 333468..334043 (+) 576 WP_005381323.1 PilN domain-containing protein Machinery gene
  K6748_RS01570 (K6748_01570) pilO 334036..334629 (+) 594 WP_053350733.1 type 4a pilus biogenesis protein PilO Machinery gene
  K6748_RS01575 (K6748_01575) pilP 334619..335134 (+) 516 WP_205461596.1 pilus assembly protein PilP Machinery gene
  K6748_RS01580 (K6748_01580) pilQ 335160..336905 (+) 1746 WP_238958948.1 type IV pilus secretin PilQ family protein Machinery gene
  K6748_RS01585 (K6748_01585) aroK 337093..337611 (+) 519 WP_005381319.1 shikimate kinase AroK -
  K6748_RS01590 (K6748_01590) aroB 337644..338744 (+) 1101 WP_005381318.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19081.29 Da        Isoelectric Point: 10.4342

>NTDB_id=601174 K6748_RS01575 WP_205461596.1 334619..335134(+) (pilP) [Vibrio alginolyticus strain HNV2]
MTSKSLLLVLMGSLLMGCQANDESLTDFIRGVETQARREVEKLKPADKYVAVTYAPEVQRAPFELPKEATIATQPVARKD
CWQPPSRRRTGKLEKFPLSQLRLKGVMGMDNTVSGLVQAPNGTVYKVKLGQYLGRNNGKVTHVSHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=601174 K6748_RS01575 WP_205461596.1 334619..335134(+) (pilP) [Vibrio alginolyticus strain HNV2]
ATGACAAGTAAGTCTTTGTTGCTGGTACTGATGGGTTCTCTATTGATGGGCTGCCAGGCGAATGATGAATCATTGACGGA
TTTTATTCGAGGAGTGGAAACACAGGCGCGTCGAGAGGTCGAGAAGCTTAAGCCCGCAGACAAATATGTTGCAGTCACGT
ACGCACCGGAAGTACAGCGTGCACCCTTTGAGTTACCCAAAGAAGCCACCATCGCGACTCAGCCAGTTGCAAGAAAAGAT
TGTTGGCAACCGCCCTCAAGAAGGCGAACTGGAAAATTAGAAAAATTCCCATTAAGCCAATTACGTTTGAAAGGGGTCAT
GGGCATGGATAACACGGTTTCTGGCCTGGTTCAGGCTCCCAATGGCACCGTCTATAAAGTTAAGCTGGGTCAATACCTTG
GACGCAATAATGGCAAAGTGACCCATGTCAGCCACTCCTACTTGTTGATTAATGAAACGTTGCCCGACGGCTTAGGGTGT
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

84.211

100

0.842
  pilP Vibrio cholerae strain A1552

56.977

100

0.573